Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq321 116 4e-21 seq444 114 1e-20 seq56 114 1e-20 seq1315 113 5e-20 seq853 113 5e-20 seq194 113 5e-20 seq1459 111 2e-19 seq1669 107 2e-18 seq688 107 2e-18 seq754 98.7 1e-15 seq841 91.5 2e-13 >seq321 Length=2160482 Score = 116 bits (128), Expect = 4e-21 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| ||||||| |||| |||||||||| || ||||||||||||||||||||| ||| Sbjct 165466 GAAAATGTTTCTCCGCGGCGGGGAATCGAAGCCCGGTCTCCCGCGTGACAGGCGGGGATA 165407 Query 60116 CTCACCACTATACTACCGAGGATT 60139 |||||||||||||||||||||||| Sbjct 165406 CTCACCACTATACTACCGAGGATT 165383 Score = 114 bits (126), Expect = 1e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| ||||||| ||| ||||||||||||| |||| |||||||||||||||| ||| Sbjct 169996 GAAAATATTTCTCCGCGGTGGGGAATCGAACCCGGGTCCCCCGCGTGACAGGCGGGGATA 169937 Query 60116 CTCACCACTATACTACCGAGGATTGA 60141 |||||||||||||||||||||||||| Sbjct 169936 CTCACCACTATACTACCGAGGATTGA 169911 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 155443 AAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 155384 Query 60118 CACCACTATACTACCGAGGATT 60139 | |||||||||||||||||||| Sbjct 155383 CTCCACTATACTACCGAGGATT 155362 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 161815 AAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 161756 Query 60118 CACCACTATACTACCGAGGATT 60139 | |||||||||||||||||||| Sbjct 161755 CTCCACTATACTACCGAGGATT 161734 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| |||| |||| ||||||||||||| || |||||||||||||||||| ||| Sbjct 168772 GAAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGACTCCCGCGTGACAGGCGGGGATA 168715 Query 60116 CTCACCACTATACTACCGAGGATT 60139 |||||||||||||||||||||||| Sbjct 168714 CTCACCACTATACTACCGAGGATT 168691 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 166563 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAT 166504 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||||||||||| Sbjct 166503 TTACCACTATACTACCGAGGATT 166481 Score = 109 bits (120), Expect = 6e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 171182 AAAACGTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 171123 Query 60118 CACCACTATACTACCGAG 60135 |||||||||||||||||| Sbjct 171122 CACCACTATACTACCGAG 171105 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| ||| ||||||||||||| | ||||||||||||||||||| ||||| Sbjct 155870 AAAAAGTTCTCCCAGGCGGGGAATCGAACCCCGATCTCCCGCGTGACAGGCGGGGATACT 155811 Query 60118 CACCACTATACTACCGAGGATT 60139 |||||||||||||||||||||| Sbjct 155810 CACCACTATACTACCGAGGATT 155789 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| ||| ||||||||||||| | ||||||||||||||||||| ||||| Sbjct 162242 AAAAAGTTCTCCCAGGCGGGGAATCGAACCCCGATCTCCCGCGTGACAGGCGGGGATACT 162183 Query 60118 CACCACTATACTACCGAGGATT 60139 |||||||||||||||||||||| Sbjct 162182 CACCACTATACTACCGAGGATT 162161 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||||| |||| ||||||||||||| ||||||| ||||||||||||| ||| Sbjct 167630 GAAAAAGTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATA 167571 Query 60116 CTCACCACTATACTACCGAGGATT 60139 |||||||||| || |||||||| Sbjct 167570 CTCACCACTACTCTGTCGAGGATT 167547 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||| | ||| |||||||| |||| | ||||||||||||||||||| || |||||||| Sbjct 180173 TTCTTCCCGGGGGGGAATCGTACCCCGTTCTCCCGCGTGACAGGCGGGGATGCTCACCAC 180114 Query 60124 TATACTACCGAG 60135 |||||||||||| Sbjct 180113 TATACTACCGAG 180102 Score = 82.4 bits (90), Expect = 9e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 60090 GGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 165146 GGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTACCGAGGATT 165097 >seq444 Length=672170 Score = 114 bits (126), Expect = 1e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 307769 CTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 307828 Query 60126 TACTACCGAGGATTGAAT 60143 |||||||||| ||| ||| Sbjct 307829 TACTACCGAGCATTTAAT 307846 Score = 109 bits (120), Expect = 6e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 314285 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 314344 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 314345 TACTACCGAGGAT 314357 >seq56 Length=612320 Score = 114 bits (126), Expect = 1e-20 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 224529 AAAAAAGATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 224588 Query 60117 TCACCACTATACTACCGAGGATT 60139 ||||||||||||||||||||||| Sbjct 224589 TCACCACTATACTACCGAGGATT 224611 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| |||||||| |||||||||||| |||| Sbjct 222276 AAAAACGATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCCCGTGACAGGCGGGGATAC 222335 Query 60117 TCACCACTATACTACCGAGGATT 60139 ||||||||||||||||||||||| Sbjct 222336 TCACCACTATACTACCGAGGATT 222358 >seq1315 Length=2237487 Score = 113 bits (124), Expect = 5e-20 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 226909 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 226968 Query 60126 TACTACCGAGGATTG 60140 ||||||||||||||| Sbjct 226969 TACTACCGAGGATTG 226983 >seq853 Length=4471870 Score = 113 bits (124), Expect = 5e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 2054638 AAAACTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 2054697 Query 60118 CACCACTATACTACCGAGGA 60137 || ||||||||||||||||| Sbjct 2054698 CATCACTATACTACCGAGGA 2054717 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 2053337 TCTCCCCGGCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2053396 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 2053397 ATACTACCGAGGA 2053409 >seq194 Length=1080038 Score = 113 bits (124), Expect = 5e-20 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 669653 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 669594 Query 60126 TACTACCGAGGATTG 60140 ||||||||||||||| Sbjct 669593 TACTACCGAGGATTG 669579 >seq1459 Length=402247 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||| Sbjct 17224 TTCTCCCCGGCGGGGAATCGAACCCCGGTTTCCCGCGTGACAGGCGGGGATACTCACCAC 17283 Query 60124 TATACTACCGAGGATT 60139 |||||||||||||||| Sbjct 17284 TATACTACCGAGGATT 17299 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||| Sbjct 22783 TTCTCCCCGGCGGGGAATCGAACCCCGGTTTCCCGCGTGACAGGCGGGGATACTCACCAC 22842 Query 60124 TATACTACCGAGGATT 60139 |||||||||||||||| Sbjct 22843 TATACTACCGAGGATT 22858 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| || |||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 18611 CTCCCCGGCGGGAAATCGAACCCCGGTCTCCCGCGTGGCAGGCGGGGATACTCACCACTA 18552 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 18551 TACTACCGAGGAT 18539 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| || |||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 24171 CTCCCCGGCGGGAAATCGAACCCCGGTCTCCCGCGTGGCAGGCGGGGATACTCACCACTA 24112 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 24111 TACTACCGAGGAT 24099 >seq1669 Length=1038227 Score = 107 bits (118), Expect = 2e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 923397 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 923338 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 923337 TACTACCGAGGA 923326 >seq688 Length=2132400 Score = 107 bits (118), Expect = 2e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 302065 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 302124 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 302125 TACTACCGAGGA 302136 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 296427 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTG 296368 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 296367 TACTACCGAGGAT 296355 >seq754 Length=972672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||| ||| | || |||||| ||||||||||| || ||||| || | Sbjct 126530 ACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACC 126589 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||| |||||||| || |||| ||| ||||||| || | || || || Sbjct 126590 ATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTCTTT 126649 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| ||| || | || | | | |||||||| || || || | |||||| Sbjct 126650 GTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAGCGTGAT 126709 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || || || | ||||| || || || |||||| Sbjct 126710 GGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||| ||| | || |||||| ||||||||||| || ||||| || | Sbjct 126074 ACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACC 126133 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || ||||| || || | ||| ||||| | || | || || || Sbjct 126134 ATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTCTTT 126193 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | ||||| || | | | | | |||||||| || || |||| ||||| Sbjct 126194 GT-CTTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGAGCGTGA 126252 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || || ||||| || || || |||||| Sbjct 126253 TGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 126290 >seq841 Length=9642 Score = 91.5 bits (100), Expect = 2e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 60080 ATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 760 ATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTACCGAGGA 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803783457240