Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq552 257 2e-63 >seq552 Length=297145 Score = 257 bits (284), Expect = 2e-63 Identities = 579/862 (67%), Gaps = 21/862 (2%) Strand=Plus/Minus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 |||||||||| || |||| || ||| | ||||| | ||| ||||| || ||||| | Sbjct 246686 TTTTTTGATACTCTGAAACTTTCCGCTCATAAAAATTAGCTTTGCCTTCCAAAGAAATGT 246627 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061 |||||||||| ||||||||||| | ||| || || || ||||||| ||| || Sbjct 246626 TTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAGTCCCAATGCCACCA 246567 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | | || || || ||||| || || |||| | ||| | | || || || || | | Sbjct 246566 ACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGCAATTGATACCCAACA 246507 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | | || | || || | | || | ||| ||||| |||||| ||| | | Sbjct 246506 AACGACACGGTAAGGCCCCTATCCAGAATTCTTTCTCTATGGCAACCGCATCACATACAA 246447 Query 16182 TATCTCTTAC---TACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAG 16238 | || || || | | | || | | |||| || ||| || | || | Sbjct 246446 TCTCGCTAACCCGTTCTCCGCTTGGCCTCTGCCTTAAA---TGCGAAAAAATCAGGCATG 246390 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||||||||| || | ||||||||||| || ||||| || |||||||| ||||| | Sbjct 246389 CAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGACCAG 246330 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 ||||||| |||| ||| || |||||||| || | ||||| | |||||| |||||||| | Sbjct 246329 GCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAATATCC 246270 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACC----GTA--CGTTCTAtttttacttt 16412 | || || || ||||| ||||| | || ||||| ||| || | ||||| | Sbjct 246269 CCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTA---T 246213 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 | |||||||| ||||| | ||| |||| |||||||||| | | || || |||| Sbjct 246212 CCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGCAT 246153 Query 16473 TAAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 | | ||| | | |||| | || || || ||||| || |||| | || || Sbjct 246152 TGA--AAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGACAGTA 246095 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 |||||| || ||||| || ||||| || || ||||| || || || ||||| || |||| Sbjct 246094 CATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCGGG 246035 Query 16591 TATTTGTA-CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 | ||||| || | || || |||||||| | ||||| || |||||| ||||| || | Sbjct 246034 AACTTGTATCTCCCGA-TAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTGG 245976 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACC 16709 |||| || ||||| || | ||| ||| || | |||||| | | |||||| || Sbjct 245975 CTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTTCCC 245916 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || || || ||| | || || ||||| || |||||||| || || |||| | Sbjct 245915 AATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCACAGATT 245856 Query 16770 TTTTATACATTTTCCATATGTC 16791 | || || | |||||||||||| Sbjct 245855 TCTTGTAGAATTTCCATATGTC 245834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500824553800