Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq552 257 1e-63 seq754 154 1e-32 >seq552 Length=297145 Score = 257 bits (284), Expect = 1e-63 Identities = 622/923 (67%), Gaps = 29/923 (3%) Strand=Plus/Plus Query 57522 CAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATG 57581 || || |||||| ||||||||| ||||||| | | | || ||||| ||||| | Sbjct 245789 CAGGACAATCCCAACAGATTTGTCTTGTTTCCACTAAAGTTCCCTGACATATGGAAATTC 245848 Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG 57641 ||||| || | | ||||| |||||||| ||||||||||| |||||| || || || Sbjct 245849 TACAAGAAATCTGTGGCATCCTTTTGGACGGTCGAAGAAGTGGACCTGGGAAATGA-CTT 245907 Query 57642 AG-CGATTGGGATTCCCTCAAAGAATCTGA-GAGAAAT--TTTATTAAACACGTGTTGGC 57697 || ||||||||| || || ||| | || ||| || ||| ||| || |||| Sbjct 245908 AGTCGATTGGGAAAAACTGAAC---TCTCAAGAAAAACAGTTCATTTCACATGTTCTGGC 245964 Query 57698 GTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGA 57757 ||| ||||| || ||||| || ||| ||||| ||||||||||| || | | || Sbjct 245965 GTTCTTCGCAGCCAGTGATGGCATAGTTGGAGAGAACTTGGTCGAAAGGTTCTATCGGGA 246024 Query 57758 AGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCA 57817 | ||||| | ||||| ||||| || |||||||||||| | ||||| |||||| | || Sbjct 246025 GATACAAGTTCCCGAGGCAAGATGTTTCTACGGATTTCAAATCGCCATGGAAAACATTCA 246084 Query 57818 TTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAG 57877 || |||||||| | || | || || || ||| | | |||| | | |||| | | || Sbjct 246085 CTCCGAAATGTACTGTCTGTTAATTGACACTTACATCAGGGAC--CCAGGAGAGAAGGAG 246142 Query 57878 A--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATC 57935 | | ||||| || || ||||| | ||| | || |||||| ||||| || | Sbjct 246143 AAGGTTTTCAATGCTATTGAAACTTTCCCCTGTGTTAAAAAAAAGGCACAGTGGGCATTT 246202 Query 57936 AAATGGAT---AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992 |||||||| ||||| | || || || || | || || | | ||||| || || Sbjct 246203 AAATGGATGGATAAAAGTTCTACAGCTACTTTTGGTGAAAGAGTTGTTGCGTTTGCGGCT 246262 Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052 ||||| || |||||||| || || ||||| |||| |||||||| |||||| | ||| Sbjct 246263 GTCGAGGGGATATTCTTCTCTGGTGCGTTTGCATCAATTTTTTGGATCAAGAAAAGAGGC 246322 Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112 || ||||| || ||||| ||| || |||||||| || | ||||| || || || | Sbjct 246323 CTAATGCCTGGTCTGACATTTTCTAATGAGTTGATTTCCAGGGACGAAGGCCTTCACTGT 246382 Query 58113 GATTTTGCGTGCCTAATGTACTCTCACATT---GTCAATAAACCGACGCGG-GATCGCAT 58168 |||||||| ||||| || | | || |||| | || | | | |||| || || | Sbjct 246383 GATTTTGCATGCCTGATTT--TTTCGCATTTAAGGCA--GAGGCCAAGCGGAGAACGGGT 246438 Query 58169 CTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACC 58228 || ||| | || ||||| || || || || || || | | ||| |||| Sbjct 246439 TAGCGAGATTGTATGTGATGCGGTTGCCATAGAGAAAGAATTCTGGATAGGGGCCTTACC 246498 Query 58229 G-GTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 | || | || | ||||| || | | ||| || ||||||||||||||||||||| Sbjct 246499 GTGTCG-TTTGTTGGGTATCAATTGCCACTCCATGGCAGAGTACATTGAGTTTGTTGCCG 246557 Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 |||| || ||| | | | | || | || | || |||| || ||||||||||| || Sbjct 246558 ACAGGCTGTTGGTGGCATTGGGACTTGA-AAAGT-ATTATAAAACGAAAAATCCTTTCCC 246615 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGA 58405 |||||| | || || | || ||||| | || |||| || |||||| || Sbjct 246616 ATTTATGGAAAACATTTCTTTGGAAGGCAAAGCTAATTTTTATGAGCGGAAAGTTTCAGA 246675 Query 58406 ATATCAAAAATACGGCGTGATGA 58428 ||||||||| || || |||| Sbjct 246676 GTATCAAAAAAGTGGAGTCATGA 246698 >seq754 Length=972672 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| || ||||| ||||| | || |||||||| Sbjct 126974 CATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCAAG 126915 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||||| |||| | || || || || ||||| |||||| | || ||||| || Sbjct 126914 CGACAGTATCGAGAATGTGAAGACGAAGATTCAAGACAAAGAAGGCATCCCACCCGATCA 126855 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct 126854 ACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTATAA 126795 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || |||||||| || || ||| | ||||||| || Sbjct 126794 CATTCAGAAAGAGTCCACTCTTCACCTTGTTCTTCGCTTGAGGGGTGG 126747 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| || || || ||||| |||| || || ||| | Sbjct 126289 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACCATCACGCTCGAAGTCGAGCCGAGC 126230 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| || || ||| ||| | | |||| |||||| | || || ||||| Sbjct 126229 GACTCCATTGAAAATGTGAAGACAAAGATTCAAG-ACAAAGAAGGCATTCCCCCAGACCA 126171 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || ||||| || || ||||||||||| | ||| | ||||| || || Sbjct 126170 ACAGAGGCTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTTAGCGACTACAA 126111 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||||||||| Sbjct 126110 TATTCAGAAGGAGTCGACCCTTCATCTGGT 126081 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || || || ||||| | || ||||| ||| | Sbjct 126745 ATGCAGATTTTCGTTAAGACTTTGACCGGAAAGACCATCACGCTTGAAGTTGAGCCGAGC 126686 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || ||| ||| | ||||| |||||| | || |||||||| Sbjct 126685 GACTCCATTGAGAATGTGAAGACAAAGA-TCCAAGACAAAGAAGGCATCCCTCCCGACCA 126627 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || ||||||||||| || |||||||| | ||| | ||||| || || Sbjct 126626 ACAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTAGCGACTACAA 126567 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||||||||| Sbjct 126566 TATTCAGAAGGAGTCGACCCTTCATCTGGT 126537 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||| |||||||| ||||| | || || || || | Sbjct 126517 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC 126458 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | |||| || || || || |||||| ||||| | || || |||||| Sbjct 126457 GACTCCATTGAAAATGTGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 126398 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || || ||||||||||| | ||| | ||||| || ||| Sbjct 126397 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAAC 126338 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || |||||||| || || ||| | ||||| || || Sbjct 126337 ATTCAAAAAGAGTCCACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 126291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755629169360