Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq552 143 5e-29 >seq552 Length=297145 Score = 143 bits (158), Expect = 5e-29 Identities = 338/507 (67%), Gaps = 9/507 (2%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCA---AAG--CAATAACGA-TTTGGCG 101908 || || |||| |||||||| |||| |||||| | ||| | | | | | ||| | Sbjct 246179 AAAAAAAAGGCACAGTGGGCATTTAAATGGATGGATAAAAGTTCTACAGCTACTTTTGGT 246238 Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 ||| | ||||||| ||||| || || || || || ||||| |||||| || ||||| Sbjct 246239 GAAAGAGTTGTTGCGTTTGCGGCTGTCGAGGGGATATTCTTCTCTGGTGCGTTTGCATCA 246298 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 ||||| ||||||||||| || || | |||||||||| || | || |||||||| ||| Sbjct 246299 ATTTTTTGGATCAAGAAAAGAGGCCTAATGCCTGGTCTGACATTTTCTAATGAGTTGATT 246358 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT 102088 || ||||||||||| ||||| | || ||||||||| || | || | ||| Sbjct 246359 TCCAGGGACGAAGGCCTTCACTGTGATTTTGCATGCCTGATTTT---TTCGCATTTAAGG 246415 Query 102089 GATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 | | ||| ||||| || || || ||||| ||| || || || || || Sbjct 246416 CAGAGGCCAAGCGGAGAACGGGTTAGCGAGATTGTATGTGATGCGGTTGCCATAGAGAAA 246475 Query 102149 GAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGC 102208 ||||| | || || | || | || |||| || || ||| | | ||| Sbjct 246476 GAATTCTGGATAGGGGCCTTACCGTGTCGTTTGTTGGGTATCAATTGCCACTCCATGGCA 246535 Query 102209 CAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTAT 102268 |||||||||| ||||| || || | || ||||| | | ||||||| |||||| | ||| Sbjct 246536 GAGTACATTGAGTTTGTTGCCGACAGGCTGTTGGTGGCATTGGGACTTGAAAAGTATTAT 246595 Query 102269 AATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTT 102328 || | || || |||||||| ||||| || ||||| | || || | || ||| Sbjct 246596 AAAACGAAAAATCCTTTCCCATTTATGGAAAACATTTCTTTGGAAGGCAAAGCTAATTTT 246655 Query 102329 TTTGAAAAGAGAGTCGCCGAGTATCAA 102355 | ||| || ||| | ||||||||| Sbjct 246656 TATGAGCGGAAAGTTTCAGAGTATCAA 246682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559491406015