Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq552 257 2e-63 seq1707 100 4e-16 >seq552 Length=297145 Score = 257 bits (284), Expect = 2e-63 Identities = 582/867 (67%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 33319 AAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACAT 33378 ||||||||| ||| |||||||| || || |||||||| || || ||||| | | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTT 246597 Query 33379 TGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATG 33438 | ||| |||| || ||||||| | | || || || || || || || || || Sbjct 246596 TATAATACTTTTCAAGTCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACT 246537 Query 33439 TTTTCATCATTTCACAATTCATTCCTATGAGTTTA-ACTGGAAGAGCCACAGTAAGAAAT 33497 | ||| | ||||| || || | | | || | ||| || | |||| | Sbjct 246536 CTGCCATGGAGTGGCAATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAA-T 246478 Query 33498 TCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGA 33557 |||| || |||| ||||||| || ||| ||||| |||| | || || Sbjct 246477 TCTTTCTCTATGGCAACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTC 246418 Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617 || |||||| ||| |||| ||||| ||||| ||||| || || ||||| || | Sbjct 246417 TGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAA 246358 Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 || || || |||||||| || || || ||||||||||| | || || | |||||| || Sbjct 246357 ATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATT 246298 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 || || || | || || ||||| || || || || || ||||| |||| || ||| || Sbjct 246297 GATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCA 246238 Query 33738 CCATAACCGGCGCTGT----CATGTATCCA--CTTTTGA--GCCCAATCGGCCTTCTTTT 33789 ||| || | ||||| | | |||||| | ||| | ||||| | ||||| |||| Sbjct 246237 CCAAAA--GTAGCTGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTT 246180 Query 33790 TTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA--TCTTT 33847 | ||||| || | ||||| || ||||| || | | | || || | || || | Sbjct 246179 TAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCCCT 246122 Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 | ||||| || || || |||| |||||||| || ||||||||||| ||||| || || Sbjct 246121 GATGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTG 246062 Query 33908 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAA 33967 |||||||||||||||||| ||||||| || || | || | | || | ||| | || Sbjct 246061 AAATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAA 246002 Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 || || ||||| |||||||||||||| || ||||||| |||||| || || | Sbjct 246001 GTTCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTG 245942 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 |||||| | | | ||||| | |||||| | || || | ||||||||||| Sbjct 245941 TTTTTCTTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTC 245882 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 || |||||||| |||||| | | || || || | ||||| |||||| | | | | Sbjct 245881 GACCGTCCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAG 245822 Query 34148 TGGGAAAATAACAAATCTATTTGGATT 34174 ||| || | |||||||| || ||||| Sbjct 245821 TGGAAACAAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 100 bits (110), Expect = 4e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 63305 AAATAGATCTCTTGTTCTA--TGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAA 63361 ||||||||||||| | || ||||| || |||||||| ||||| ||||| || | ||| Sbjct 223604 AAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTGTTCTTCCTTAAG-TCCAAGAA 223662 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | ||||| ||||| |||||||||||||| || | |||| || | ||||| Sbjct 223663 ATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGTT 223722 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||||| || || | || || || || ||| ||||| | |||||| || | | ||| Sbjct 223723 GCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGACC 223782 Query 63482 GTTTGATATACCATTGGT 63499 |||||| | |||||||| Sbjct 223783 GTTTGAGACTCCATTGGT 223800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802382032240