Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq552 239 4e-58 seq502 82.4 7e-11 >seq552 Length=297145 Score = 239 bits (264), Expect = 4e-58 Identities = 410/590 (69%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 11611 TAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAG 11670 |||||| ||| || | || ||||||||||| || | |||||||| || || | Sbjct 246412 TAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAA 246353 Query 11671 TTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGC 11730 |||||||||||||| | || ||||| | |||| ||| || |||||||| || | || Sbjct 246352 CTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGC 246293 Query 11731 AAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 ||| | |||||| |||||||| ||||| ||||| ||||| || || |||||||| ||| | Sbjct 246292 AAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAA 246233 Query 11791 --TACCTTGTTGC-----TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 || || || | || |||||||| ||||| | || || ||||| || | Sbjct 246232 AGTAGCT-GTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACAC 246174 Query 11844 ATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATG 11903 | | ||||| ||||| || || | | | || ||| || || | || | Sbjct 246173 AGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAG 246114 Query 11904 TATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCAT 11963 | || ||||| | || |||||||| || ||||| |||||||| || ||||||||||| | Sbjct 246113 TGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGT 246054 Query 11964 AGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCAT 12023 ||||||||| |||||| | | |||| ||| ||| || ||||| | || ||||| Sbjct 246053 AGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTC 245994 Query 12024 TTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGT 12083 || || |||||||| | ||| || || || || | |||| || || | |||||| | Sbjct 245993 CAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTC-T 245935 Query 12084 CTTTAGTT-AATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTC 12142 |||| | ||| |||||||| |||| || ||| | || |||||||| || ||| Sbjct 245934 TGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTC 245875 Query 12143 CAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 ||||| |||||| |||| || || | |||||| || ||| | |||| Sbjct 245874 CAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTT 245825 >seq502 Length=1712060 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11708 ttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCA 11767 ||||||| ||| || || ||||||||||||||||| || || ||||| |||||||| ||| Sbjct 405433 TTTTTTAGCCAGAAAATGGCAGCAAATGAACCAGAGAAAAAGATTCCTTCCACAGCAGCA 405374 Query 11768 AATGCTACTACTCTTTCTCCATA 11790 || || |||| || || ||||| Sbjct 405373 AAAGCCACTATCCTCTCACCATA 405351 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11708 ttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCA 11767 ||||||| ||| || || ||||||||||||||||| || || ||||| |||||||| ||| Sbjct 409685 TTTTTTAGCCAGAAAATGGCAGCAAATGAACCAGAGAAAAAGATTCCTTCCACAGCAGCA 409626 Query 11768 AATGCTACTACTCTTTCTCCATA 11790 || || |||| || || ||||| Sbjct 409625 AAAGCCACTATCCTCTCACCATA 409603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513479269520