Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq552 269 3e-67 >seq552 Length=297145 Score = 269 bits (298), Expect = 3e-67 Identities = 435/621 (70%), Gaps = 12/621 (2%) Strand=Plus/Minus Query 36139 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 36198 |||||| ||| |||| ||||| ||||| ||||| || || ||||| || ||| || Sbjct 246412 TAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAA 246353 Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 || || ||||| || || || ||||||||||| | || || | |||||| || || || Sbjct 246352 CTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGC 246293 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 ||| | ||||| ||||| || || || || |||||||| |||| || ||| || ||| | Sbjct 246292 AAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAA 246233 Query 36319 ACCGGC------ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 36372 | || ||| | || ||||| || ||||| | ||||| ||||| ||||| Sbjct 246232 AGTAGCTGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACA 246173 Query 36373 AGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA--TCTTTAACATAT 36430 || | || || |||||||| || | | | || || | || || | | || Sbjct 246172 GGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCCCTGATGTAA 246115 Query 36431 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 36490 || ||||| || |||| |||||||| || ||||||||||| ||||| |||||||||||| Sbjct 246114 GTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCG 246055 Query 36491 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 36550 ||||||||||| ||||||| || |||| || | | || | ||| | || || || Sbjct 246054 TAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCT 245995 Query 36551 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 36610 ||||| || ||||||||||| || ||||||| |||||| || || | |||||| Sbjct 245994 CCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTC- 245936 Query 36611 TTTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 36669 || | ||| ||||| | |||||| | || || | ||||||||||| || || Sbjct 245935 TTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGT 245876 Query 36670 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 |||||| |||||| | | || || || | ||||| |||||| | | | | |||||| Sbjct 245875 CCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAA 245816 Query 36730 AATAACAAATCTATTTTGATT 36750 | |||||||| || |||| Sbjct 245815 CAAGACAAATCTGTTGGGATT 245795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156896899720