Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq754 109 5e-19 >seq754 Length=972672 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || || | ||| | ||||| || |||||||| |||||||||||||| |||| || | Sbjct 126756 AAGCGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGG 126815 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| || ||||| ||||| | || ||||| || |||||||| || ||||||||| Sbjct 126816 CCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCT 126875 Query 139667 TTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || || || | | || | ||||| | || || || |||| || Sbjct 126876 TTGTC-TTGAATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCAACTTCAAGAGT 126934 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || ||||||| || || ||||| || ||||| Sbjct 126935 GATAGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||||| || | |||| || ||||| || ||||| || || ||||| Sbjct 126519 CCGCCACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126578 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | || || ||||| ||||||| | || || |||||||| Sbjct 126579 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGG 126638 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | | |||| | ||||| || Sbjct 126639 ATGCCTTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACT 126698 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| |||||||| || || ||||| || ||||| Sbjct 126699 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCAT 126745 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || ||||||||||||||||| || ||||| Sbjct 126291 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTG 126350 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||| || || || |||||| | ||||| || || || Sbjct 126351 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 126410 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | | |||| | ||||| || Sbjct 126411 ATACCTTCTTTGTCCTGGATCTTCGTCTTCACATTTTCAATGGAGTCGCTTGGCTCGACT 126470 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || |||||||||| ||||| ||||| || |||||| Sbjct 126471 TCAAGCGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCATA 126518 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||||||| | |||| || ||||| || ||||| || || ||||| Sbjct 126063 CCGCCACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126122 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||| || || || ||||||| | || || || || || Sbjct 126123 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 126182 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | ||||| || | | ||| | | |||| | ||||| || Sbjct 126183 ATGCCTTCTTTGTC-TTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGAC 126241 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||||| || || ||||| || ||||| Sbjct 126242 TTCGAGCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 126289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052013853600