Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq552 284 2e-71 seq1707 84.2 3e-11 >seq552 Length=297145 Score = 284 bits (314), Expect = 2e-71 Identities = 590/868 (68%), Gaps = 18/868 (2%) Strand=Plus/Minus Query 49697 AAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACAT 49756 ||||||||| ||| |||||||| || || |||||||| || || ||||| | | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTT 246597 Query 49757 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATG 49816 ||||| |||| || ||||||| | | || || || || ||||| || || || Sbjct 246596 TATAATACTTTTCAAGTCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACT 246537 Query 49817 TTTTCATCATTTCACAATTCATTCCTATAAGTTTA-ACTGGAAGAGCCGCAGTAAGAAAT 49875 | ||| | ||||| || || | | | || | ||| || | |||| | Sbjct 246536 CTGCCATGGAGTGGCAATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAA-T 246478 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 |||| || |||| |||||||| || ||| ||||| |||| | || || Sbjct 246477 TCTTTCTCTATGGCAACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTC 246418 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 49995 ||| |||||| ||| |||| ||||| ||||| ||||| || || ||||| || | Sbjct 246417 TGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAA 246358 Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || | || || ||||| || || || ||||||||||| | || || | |||||| || Sbjct 246357 ATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATT 246298 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || ||||| | ||||| ||||| || || || || || ||||| ||||||| ||| || Sbjct 246297 GATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCA 246238 Query 50116 CCATAACTGGCGCTGT----CATGTATCCA--CTTTTGA--GCCCAATCGGCCTTCTTTT 50167 ||| || | || ||| | | |||||| | ||| | ||||| | ||||| |||| Sbjct 246237 CCAAAAGTAGC--TGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTT 246180 Query 50168 TTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA--TCTTT 50225 | ||||| || | ||||| || ||||| || | | | || || | || || | Sbjct 246179 TAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCCCT 246122 Query 50226 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 50285 | ||||| || || || |||| |||||||| || ||||||||||| ||||| || || Sbjct 246121 GATGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTG 246062 Query 50286 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAA 50345 |||||||||||||||||| ||||||| || || | || | | || | ||| | || Sbjct 246061 AAATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAA 246002 Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 || || ||||| || ||||||||||| || ||||||| |||||| || || || Sbjct 246001 GTTCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTG 245942 Query 50406 TTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 50464 |||||| ||| | ||| ||||| | |||||| | || || | || ||||||| Sbjct 245941 TTTTTC-TTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTT 245883 Query 50465 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGA 50524 | || |||||||| |||||| | | || || || | ||||| |||||| | | | | Sbjct 245882 CGACCGTCCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTA 245823 Query 50525 TTGGGAAAATAACAAATCTATTTGGATT 50552 ||| || | |||||||| || ||||| Sbjct 245822 GTGGAAACAAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || || ||| ||| | || || || | | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || ||||||||||| ||||| ||||| ||||| || ||||| | ||||| ||| Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | ||||||||||| || || || | | | |||| ||| || || Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGG 217496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 79977 AAATAGATCTCTGGTTCTA--TGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAA 80033 |||||||||||| | || || || || |||||||| ||||| ||||| || | ||| Sbjct 223604 AAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTGTTCTTCCTTAAG-TCCAAGAA 223662 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | ||||| ||||| |||||||||||||| || | |||| |||| ||||| Sbjct 223663 ATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGTT 223722 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||||| || || | || || || || ||| ||||| | |||||| || | | ||| Sbjct 223723 GCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGACC 223782 Query 80154 ATTGGATGTACCATTGGTC 80172 || || ||||||||| Sbjct 223783 GTTTGAGACTCCATTGGTC 223801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251444830120