Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq552 237 2e-57 >seq552 Length=297145 Score = 237 bits (262), Expect = 2e-57 Identities = 401/575 (70%), Gaps = 13/575 (2%) Strand=Plus/Minus Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 |||||| | || ||||||||||| |||||||| || || || ||| | || || || Sbjct 246403 AAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGA 246344 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 |||||| | || ||||| | |||| ||| || | |||||| |||| ||||| | || Sbjct 246343 AAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACC 246284 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 || |||||||| ||||| || || |||||||| | | || ||| ||||| | ||| | Sbjct 246283 AGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGT 246224 Query 14042 -----TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14096 ||| || || |||||| ||||| | | |||||||||| | | | Sbjct 246223 AGAACTTTTATCCAT--CCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAA 246166 Query 14097 GTTTCAATAGCATTAAATAAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAA 14154 |||||||||||||| || | | ||||||||| | || | ||| |||| || |||| Sbjct 246165 GTTTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGA--TGTAAGTGTCAA 246108 Query 14155 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGC 14214 | | | | |||||||| ||||| ||||||||||| || || ||||| || || || | Sbjct 246107 TTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAAC 246048 Query 14215 ATCTAGCTTCCGACCATTGTA-CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14273 |||| || || | ||||| || |||| || || |||||| |||| || || |||| Sbjct 246047 ATCTTGCCTCGGGAACTTGTATCTCCCGA-TAGAACCTTTCGACCAAGTTCTCTCCAACT 245989 Query 14274 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14333 || |||||||| ||||| || || |||| | | | ||| || | || |||| | | Sbjct 245988 ATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAG 245929 Query 14334 TTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 || ||||||| ||||||| ||| || || || || ||||| || || |||||||| Sbjct 245928 TTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAG 245869 Query 14394 CTAGCGACAGCTTTTTTATACATTACCCATATTTC 14428 || |||| ||| || || | | |||||| || Sbjct 245868 GATGCCACAGATTTCTTGTAGAATTTCCATATGTC 245834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716408572200