Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq552 232 6e-56 >seq552 Length=297145 Score = 232 bits (256), Expect = 6e-56 Identities = 397/572 (69%), Gaps = 7/572 (1%) Strand=Plus/Minus Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709 |||||| | || ||||||||||| |||||||| || || || ||| | || || || Sbjct 246403 AAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGA 246344 Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769 |||||| | || ||||| | |||| ||| || | |||||| |||| || || | || Sbjct 246343 AAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACC 246284 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCT-T 13828 || |||||||| ||||| || || |||||||| | | || ||| ||||| | ||| | Sbjct 246283 AGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGT 246224 Query 13829 TTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 ||| || |||||||| ||||| | | |||||||||| | | | || Sbjct 246223 AGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGT 246164 Query 13887 TTCGATTGCATTGAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATA 13944 ||| || |||||||| | | ||||||||| | || | || ||||| || ||||| Sbjct 246163 TTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTG--ATGTAAGTGTCAATT 246106 Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT 14004 | | | |||||||| ||||| |||||||| || || || ||||| || || |||||| Sbjct 246105 AACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACAT 246046 Query 14005 CTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATA 14064 || || || | ||||| |||| || || ||||| ||||||| || ||| || Sbjct 246045 CTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATG 245986 Query 14065 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14124 |||||||| ||||| || || |||| | | | ||| || | || |||| | ||| Sbjct 245985 CCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTC 245926 Query 14125 AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 ||||||| ||||||| |||| || || || || ||||| || || |||||||| Sbjct 245925 AGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGAT 245866 Query 14185 GCGACAGCTTTTTTATACATTACCCATATTTC 14216 || |||| ||| || || | | |||||| || Sbjct 245865 GCCACAGATTTCTTGTAGAATTTCCATATGTC 245834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577236098120