Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq552 244 1e-59 seq1707 98.7 1e-15 >seq552 Length=297145 Score = 244 bits (270), Expect = 1e-59 Identities = 427/620 (69%), Gaps = 10/620 (2%) Strand=Plus/Minus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||||| ||| |||| ||||| ||||| ||||| || || || || || ||| || Sbjct 246412 TAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAA 246353 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 || || ||||| || || || ||||||||||| | || || | |||||| || || || Sbjct 246352 CTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGC 246293 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| | ||||| ||||| || || || || |||||||| |||| || ||| || ||| | Sbjct 246292 AAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAA 246233 Query 42226 ACCGGC------ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 42279 | || ||| | || ||||| || ||||| | ||||| ||||| ||||| Sbjct 246232 AGTAGCTGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACA 246173 Query 42280 AGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA--TCTTTAACATAT 42337 || | ||||| || ||||| || | | | || || | || || | | || Sbjct 246172 GGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCCCTGATGTAA 246115 Query 42338 GTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCG 42397 || || || || |||| |||||||| || ||||||||||| ||||| || ||||||||| Sbjct 246114 GTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCG 246055 Query 42398 TAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCG 42457 ||||||||||| ||||||| ||| |||| || | | || | ||| | || || || Sbjct 246054 TAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCT 245995 Query 42458 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 42517 ||||| || ||||||||||| || ||||||| |||||| || || | |||||| Sbjct 245994 CCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCT 245935 Query 42518 TCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTC 42577 | | | | ||| | |||||| | || || | || |||||||| |||||| Sbjct 245934 TGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTC 245875 Query 42578 CAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAA 42637 ||||| ||||| | | || || || | ||||| || ||| | | | | ||| || Sbjct 245874 CAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAAC 245815 Query 42638 ATAACAAATCTATTTGGATT 42657 | |||||||| || ||||| Sbjct 245814 AAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || || ||| |||| |||| || || | | | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | |||||||||||||| ||||| ||||| ||||| || ||||| | ||||| ||| Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | ||||||||||| || || || | | | |||| ||| || || Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGG 217496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 72060 AAATAGATCTCTGGTTCTA--TGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAA 72116 |||||||||||| | || || || || |||||||| ||||| ||||| || | ||| Sbjct 223604 AAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTGTTCTTCCTTAAG-TCCAAGAA 223662 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | ||||| ||||| |||||||||||||| || | |||| || | ||||| Sbjct 223663 ATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGTT 223722 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||||| || || | || || || || ||| ||||| | |||||| || | | ||| Sbjct 223723 GCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGACC 223782 Query 72237 ATTGGATGCACCATTGGTC 72255 || || | ||||||||| Sbjct 223783 GTTTGAGACTCCATTGGTC 223801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122983599080