Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq552 253 2e-62 seq502 87.8 2e-12 >seq552 Length=297145 Score = 253 bits (280), Expect = 2e-62 Identities = 586/866 (68%), Gaps = 29/866 (3%) Strand=Plus/Minus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 |||||||||| || |||| | ||| |||| || | ||| ||||| || ||||| | Sbjct 246686 TTTTTTGATACTCTGAAACTTTCCGCTCATAAAAATTAGCTTTGCCTTCCAAAGAAATGT 246627 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTA 12977 |||||||||| |||||||||||||| ||| || |||| | || ||| | | | Sbjct 246626 TTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAGTCCCAATGCCACCA 246567 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 ||| ||||| ||||||||||| ||||||| | ||| | | || || || || | | Sbjct 246566 ACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGCAATTGATACCCAACA 246507 Query 13038 ATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | ||| || | || || | | || | ||| ||||| |||| || || || Sbjct 246506 AACG-ACACGGTAAGGCCCCTATCCAGAATTCTTTCTCTATGGCAACCGCATCACATACA 246448 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACATCATACATG 13154 || || || | ||||||| | | | | || || |||| ||| |||| |||| Sbjct 246447 ATCTCGCTAACC-CGTTCTCCGCTTG-GCCTCTGCCTTAAATGCGAAAAAATCAGGCATG 246390 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 ||||||||||||| | ||||| || || || | ||| || |||||||| ||||| | Sbjct 246389 CAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGACCAG 246330 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| || |||| ||| || |||||||| || | ||||||| ||| || || ||||| | Sbjct 246329 GCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAATATCC 246270 Query 13275 CTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA-CT-----ATTTTTACTC 13327 | || || || |||||||| | |||| ||||||||| | ||| || | ||||| Sbjct 246269 CCTCGACAGCCGCAAACGC-AACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTA--- 246214 Query 13328 TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCG 13387 || ||||| || ||||| | ||| |||| |||||| ||| | | |||| || || Sbjct 246213 TCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGCA 246154 Query 13388 TTAAATAAATAAt--ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 || || | | | || | |||| ||| || ||||| || || || | | | Sbjct 246153 TTGAAAACCTTCTCCTTCTCTCCT--GGGTCCCTGATGTAAGTGTCAATTAACAGACAGT 246096 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 ||||||| || ||||| |||||||| || ||||| || || || |||||||| ||||| | Sbjct 246095 ACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCGG 246036 Query 13506 ATACCTG-AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564 || || | || | || || || ||||| | ||||| || |||||| || ||||| Sbjct 246035 GAACTTGTATCTCCCGA-TAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTG 245977 Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA---CAACTTT 13621 || || || || || || | || ||| || | |||||| || || || ||| Sbjct 245976 GCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTC---TTGAGAGTTCAGTTTT 245920 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 |||||| || || ||| | || || || || || |||||||| || || ||| Sbjct 245919 TCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCACA 245860 Query 13682 GCCTTCTTATACATCATCCATATATC 13707 | ||||| || | ||||||| || Sbjct 245859 GATTTCTTGTAGAATTTCCATATGTC 245834 >seq502 Length=1712060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 13466 TCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAA 13525 || || ||||||||||| ||||| |||||||| ||||||| ||||| ||||| | Sbjct 404521 TCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCTG 404462 Query 13526 AATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATG 13585 || | || | |||||||| || || || || || |||||||| || |||||||| | Sbjct 404461 AAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACA 404402 Query 13586 TGCTTAATAAA 13596 ||||| || || Sbjct 404401 TGCTTGATGAA 404391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 13466 TCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAA 13525 || || ||||||||||| ||||| |||||||| ||||||| ||||| ||||| | Sbjct 408772 TCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCTG 408713 Query 13526 AATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATG 13585 || | || | |||||||| || || || || || |||||||| || |||||||| | Sbjct 408712 AAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACA 408653 Query 13586 TGCTTAATAAA 13596 ||||| || || Sbjct 408652 TGCTTGATGAA 408642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972246728066