Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq552 242 9e-59 seq754 149 1e-30 seq506 84.2 5e-11 >seq552 Length=297145 Score = 242 bits (268), Expect = 9e-59 Identities = 411/592 (69%), Gaps = 10/592 (2%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| | |||||| || || ||| ||||||| | ||||| | | || Sbjct 245804 AGATTTGTCTTGTTTCCACTAAAGTTCCCTGACATATGGAAATTCTACAAGAAATCTGTG 245863 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 || || |||||||| || |||||||| || ||| |||||||| | |||||| |||| Sbjct 245864 GCATCCTTTTGGACGGTCGAAGAAGTGGACCTGGGAAATGACTTAGTCGATTGGGAAAAA 245923 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 | || | |||||| | || || || || |||| ||||| || |||| |||||| Sbjct 245924 CTGAACTCTCAAGAAAAACAGTTCATTTCACATGTTCTGGCGTTCTTCGCAGCCAGTGAT 245983 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 || || ||| || || | || || | ||||| || ||| |||| |||| || || Sbjct 245984 GGCATAGTTGGAGAGAACTTGGTCGAAAGGTTCTATCGGGAGATACAAGTTCCCGAGGCA 246043 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 |||||||| |||||||| || || || || ||||| ||||| || || |||||| |||| Sbjct 246044 AGATGTTTCTACGGATTTCAAATCGCCATGGAAAACATTCACTCCGAAATGTACTGTCTG 246103 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTATGA 269057 ||||| || ||||| || || | | || | | ||| ||||| | |||| Sbjct 246104 TTAATTGACACTTACATCAGGGAC--CCAGGAGAGAAGGAGAAGGTTTTCAATGCTATTG 246161 Query 269058 GAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AAACGAT 269113 |||| | |||||| | |||||| | | ||||| | |||||||| ||| | | Sbjct 246162 AAACTTTCCCCTGTGTTAAAAAAAAGGCACAGTGGGCATTTAAATGGATGGATAAAAGTT 246221 Query 269114 --AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 | || ||| || ||||| | ||||| ||||| ||||| || || |||||||| | Sbjct 246222 CTACAGCTACTTTTGGTGAAAGAGTTGTTGCGTTTGCGGCTGTCGAGGGGATATTCTTCT 246281 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || | ||||| | || |||||| | |||||||||||||| ||||| || | || | Sbjct 246282 CTGGTGCGTTTGCATCAATTTTTTGGATCAAGAAAAGAGGCCTAATGCCTGGTCTGACAT 246341 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | ||||| || ||||| |||||||||||| | ||||| || || || || Sbjct 246342 TTTCTAATGAGTTGATTTCCAGGGACGAAGGCCTTCACTGTGATTTTGCATG 246393 >seq754 Length=972672 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || | | ||| || || || | || || ||||||||||| ||||| ||| Sbjct 126744 ATTCCACCCCTCAAGCGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCA 126803 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| | || ||||| |||||||| ||||| ||||| || | ||||||||| || Sbjct 126804 CTCAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGT 126863 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| | || ||||| || | | ||||| ||||| Sbjct 126864 GGGATGCCTTCTTTGTCTTGAATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCA 126923 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| || || || || || || |||||||| Sbjct 126924 ACTTCAAGAGTGATAGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || ||||||||||| ||||| ||||| | ||| ||||| Sbjct 126081 ACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACCATCTTCC 126140 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || ||||| || || || ||||||||||| || || || || |||||||| || ||| Sbjct 126141 AACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTGA 126200 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||| || |||||||| | || ||||| || || || || || || || ||||| Sbjct 126201 ATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGAGCGTGATGGTCTTT 126260 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||||||| Sbjct 126261 CCGGTCAGAGTCTTCACGAAAATCTGCATT 126290 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || ||||||||||| ||||| ||||| | ||| ||||| Sbjct 126537 ACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACCATCTTCC 126596 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| || ||||| || || || |||||||| || ||||| || |||||||| || || Sbjct 126597 AATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGG 126656 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||| || ||||| || | || ||||| || || || || || || || ||||| Sbjct 126657 ATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAGCGTGATGGTCTTT 126716 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || || || ||||||||| Sbjct 126717 CCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 >seq506 Length=2789561 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| ||| ||| ||||| || | ||| || ||||| | || || || ||||| || || Sbjct 445610 TTTCTTTGCTCCTCCTCTCAGTCGAAGCACAAGATGAAGAGTGGACTCCTTCTGGATGTT 445551 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||| ||| ||||| | || ||||| || ||||| ||||||||||| | || || || Sbjct 445550 ATAATCACTAAGAGTGCGTCCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTTTGCTG 445491 Query 104443 ATCAGGAGGTATTCCT 104458 ||||| || |||||| Sbjct 445490 GTCAGGTGGAATTCCT 445475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369883819564