Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq754 132 4e-26 seq506 87.8 2e-12 >seq754 Length=972672 Score = 132 bits (146), Expect = 4e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| ||||||| || | || | ||| | ||| || || ||||| | | Sbjct 126279 AAAATCTGCATTCCACCTCTCAGACGAAGAACAAGGTGAAGAGTGGACTCTTTTTGAATG 126338 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||||| | |||| ||| |||| ||| |||||| | ||||| || || ||| Sbjct 126339 TTGTAGTCGCTGAGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAACCTCTGC 126398 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || |||||||||||||| | || || | ||| || | | | ||| Sbjct 126399 TGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTCGTCTTCACATTTTCAATGGAGTC- 126457 Query 94949 GCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||| ||||| |||| |||||||||||| || || || |||||||| ||||||||||| Sbjct 126458 GCTTGGCTCGACTTCAAGCGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 126517 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||| || | || || ||||| || | || || ||||| | |||| | Sbjct 126075 CGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACCA 126134 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| |||||| | ||||| | || || || ||||| ||||| ||||||||| Sbjct 126135 TCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTCTTTG 126194 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||| |||| ||| || | | | ||| || || ||||| || | |||||| Sbjct 126195 TCTTGAATCTTTGTCTTCACATTTTCAATGGAGTC-GCTCGGCTCGACTTCGAGCGTGAT 126253 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || ||||| ||||| || |||||||| Sbjct 126254 GGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 126289 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| || ||||| || | || | ||| | ||| || || || || | | Sbjct 126735 AAAATCTGCATTCCACCCCTCAAGCGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATG 126794 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| |||| ||| | ||| || || ||||| || | || || | | || Sbjct 126795 TTATAATCACTCAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGT 126854 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || || || ||||||||||| | ||| || | ||| || ||| | |||| Sbjct 126855 TGATCGGGTGGGATGCCTTCTTTGTCTTGAATCTTCGTCTTCACATTCTCGATACTGTC- 126913 Query 94949 GCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||| || || |||| ||||| ||||| || || ||||| ||||| ||||||||||| Sbjct 126914 GCTTGGTTCAACTTCAAGAGTGATAGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Query 95008 G 95008 | Sbjct 126974 G 126974 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||| || | || || ||||| || | || || ||||| | |||| | Sbjct 126531 CGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACCA 126590 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || | ||||| | ||| || || || ||||| || ||||||||| Sbjct 126591 TCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTCTTTG 126650 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || |||| ||| || | | | ||| || || || || |||| |||||| Sbjct 126651 TCTTGGATCTTTGTCTTCACATTCTCAATGGAGTC-GCTCGGCTCAACTTCAAGCGTGAT 126709 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || | ||| || || || |||||||| Sbjct 126710 GGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCAT 126745 >seq506 Length=2789561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||||| ||| | ||| | || | ||| || ||||| || | ||||||||| | Sbjct 445602 CTCCTCCTCTCAGTCGAAGCACAAGATGAAGAGTGGACTCCTTCTGGATGTTATAATCAC 445543 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | |||| ||| || |||||||| || |||| || ||||||||||| || || | Sbjct 445542 TAAGAGTGCGTCCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTTTGCTGGTCAGGTG 445483 Query 94899 GAATACCT 94906 |||| ||| Sbjct 445482 GAATTCCT 445475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448280368163880