Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1006 105 1e-18 seq70 98.7 2e-16 seq1685 89.7 1e-13 seq348 89.7 1e-13 seq1145 84.2 4e-12 seq86 82.4 1e-11 >seq1006 Length=553146 Score = 105 bits (116), Expect = 1e-18 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 4446 ACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTT 4505 ||| ||||| | ||||| || ||||||||||| ||||||||||||||| |||||| Sbjct 397682 ACAGAAACTGATTCCAACTTTGAGTGATAAAAATAAATATGTTATTCACTATCGAAATTT 397623 Query 4506 GAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGA 4565 | | | | | |||||| ||| || || ||| |||| | ||| || ||||| | Sbjct 397622 ACAGTTGTATCTCGCTTTAGGATTAAAACTGAAAAAAGTACATCGAGTATTAAAATTCAA 397563 Query 4566 GCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAA 4625 ||||| ||| | ||| || || || ||||| | ||| | ||| || Sbjct 397562 TCAATCTCCTTGGTTGAAAGAGTACATAGACTTCAATACACAAATAAGAACTCAAGCGAA 397503 Query 4626 GAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGAT 4685 ||| ||||||||| |||||| |||| | ||||||||| | || |||||||| ||||| Sbjct 397502 AAATTCATTCGAAAAAGACTTTTTTAAACTGATGAATAATTCAGTCTTTGGAAATACGAT 397443 Query 4686 GGAGAATGTACGAAAA 4701 | | ||| | || ||| Sbjct 397442 GCAAAATATTCGTAAA 397427 >seq70 Length=280200 Score = 98.7 bits (108), Expect = 2e-16 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 4440 CAAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAA 4499 |||| || ||||||| | |||| || | | |||||||| |||||| |||||||| Sbjct 158293 CAAGTAAAAAAAACTGATTCCAACCTTGAGCAACAAAAATAAATATGTTCTTCACTATTG 158352 Query 4500 AAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAA 4559 |||||| ||| | | | |||||||| ||| || | ||| |||| || || | Sbjct 158353 AAATTTACAACTGTATATGGATTTAGGATTAAAACTAACCAAAGTACATTGAGCATTAGA 158412 Query 4560 ATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACT 4619 ||| | ||||| ||||| ||| |||||||| ||||| | ||| | Sbjct 158413 ATTCAATCAATCTCTATGGCTGAAACAGTATATCGACTTCAATACACAAAAAAGAACTCA 158472 Query 4620 AGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAA 4679 || || ||| || |||||| | || | ||| ||||||||||| | || |||||||| Sbjct 158473 AGTGAACAATTCATTTGAAAAAGATTTCTTCAAACTAATGAATAATTCAGTATTTGGAAA 158532 Query 4680 GACGATGGAGAATGTACGAAAA 4701 ||||||||| || | |||||| Sbjct 158533 GACGATGGAAAACATTCGAAAA 158554 >seq1685 Length=404103 Score = 89.7 bits (98), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 10/167 (6%) Strand=Plus/Minus Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAA 4599 ||||| || | ||| ||||||||| | ||||| ||| | || |||||||||| Sbjct 26623 AAAATCCATCGAGTTTTGAAATTTAATCAATCTCCTTGGTTGAAGAGCTATATCGATATC 26564 Query 4600 AATACCGCATGCCGAAAA---CTA--GCTAAGAATGAGTTCGaaaaaaaCTTTTATAAAT 4654 || |||| | ||||| ||| || |||||| || |||||| |||| | ||| Sbjct 26563 AA---CGCA--CAGAAAAGAACTAATGCCAAGAATTTATTTGAAAAAGACTTCTTCAAAC 26509 Query 4655 TAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 ||||||||||||| || | ||| ||||| ||||| |||||||||||| Sbjct 26508 TAATGAATAATGCAGTCTGTGGGAAGACAATGGAAAATGTACGAAAA 26462 >seq348 Length=609262 Score = 89.7 bits (98), Expect = 1e-13 Identities = 177/251 (71%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTT 4533 |||| ||| || || ||||| || ||| ||| ||||| | | || | | || || | Sbjct 295524 AAAACTAAATACGTAATTCATCATGAAAGTTTAAAACAGTATATAAAGCTTGGATT-GCG 295582 Query 4534 CTTAAGAAA-ATACACCTA-GTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATA 4591 |||| ||| || ||| | || || || ||||| | ||||| ||| | ||| |||| | Sbjct 295583 ATTAAAAAAGATCCACAGACGTATT-AAGTTTGAAGAGTCAGAATGGTTGAAACCATACA 295641 Query 4592 TCGATAAAAATACCGCATGCCGAAAACT--AGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649 | || || ||||| | | | | | ||||| ||||| || |||||| |||||| Sbjct 295642 TTGAGAAGAATACT--AACCTTAGAGCGGCAGCTAGCAATGATTTTGAAAAAGACTTTT- 295698 Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATA-AAG 4708 ||||||||||||||| | | | ||| ||||| ||||| ||| |||| ||||| | || Sbjct 295699 TAAATTAATGAATAACTCTATATATGGTAAGACTATGGATAATATACG-AAATAGAGTAG 295757 Query 4709 ATATATATTTA 4719 ||||| ||||| Sbjct 295758 ATATACATTTA 295768 >seq1145 Length=575799 Score = 84.2 bits (92), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTT 4533 ||| | || | |||| | ||||||| ||| | || || | | ||||| || ||| Sbjct 413644 AAACAAAAATGTGTTCTCCACTATAGGAATCTACAATTATATCTCGATTTGGGATTAAAA 413585 Query 4534 CTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATC 4593 || | ||||| || | || || |||||| | |||||| |||| | || ||||| Sbjct 413584 CTAACCAAAATTCATCGTGTATTAAAATTTAATCAATCACCCTGGTTGAAGAGCTATATT 413525 Query 4594 GATAAAAATAC-CGCATGCCGAAAACTA--GCTAAGAATGAGTTCGaaaaaaaCTTTTAT 4650 ||| || || || | | | ||| ||||| ||| ||| |||||| |||| | Sbjct 413524 GATTTCAACACACGGAAACG---ACCTAATGCTAAAAATTCGTTTGAAAAAGACTTCTTC 413468 Query 4651 AAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 ||||| ||||||||||| || ||||| || || ||||||||||| || ||| Sbjct 413467 AAATTCATGAATAATGCAGTCTTTGGTAAAACTATGGAGAATGTTCGCAAA 413417 >seq86 Length=1161951 Score = 82.4 bits (90), Expect = 1e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 4624 AAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACG 4683 || ||||| || ||||| || ||| || || ||||||||||| |||||||||||||| Sbjct 14910 AAAAATGATTTTGAAAAGAATCTTTTCAAGTTGATGAATAATGCAGTTTTTGGAAAGACT 14969 Query 4684 ATGGAGAATGTACGAAAATATAA-AGATATATATTTAAGAACAAAGT 4729 ||||| ||| | || ||||| || |||||| || ||| ||| |||| Sbjct 14970 ATGGAAAATATTCG-AAATAGAAGAGATATTTACTTAGTAACTAAGT 15015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97972151058882