Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq552 224 1e-53 >seq552 Length=297145 Score = 224 bits (248), Expect = 1e-53 Identities = 411/606 (68%), Gaps = 9/606 (1%) Strand=Plus/Minus Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525 ||| |||| |||||||||||||| || | ||||| ||||| || || |||||||| Sbjct 246403 AAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGA 246344 Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585 |||||| | ||| ||||||| ||||| || || | |||||| ||||| ||||| || || Sbjct 246343 AAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACC 246284 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC----GTA--TGT 21639 || ||||| || ||||| || || ||||| ||||| | || |||||| ||| ||| Sbjct 246283 AGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGT 246224 Query 21640 AGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAAT 21699 ||| ||||||| |||||||| |||||| | |||||||| ||||| ||| | Sbjct 246223 AGAACTTTTATCC---ATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAA 246167 Query 21700 TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNN 21759 || |||||||| || |||| | | || || || || | ||| Sbjct 246166 AGTTTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAAT 246107 Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819 || |||||||| || || || ||||| || || || ||||||||||| ||||| Sbjct 246106 TAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACA 246047 Query 21820 TCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTAT 21879 ||||||||| | | ||| | ||| ||| || | || ||||||| || ||||| Sbjct 246046 TCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTAT 245987 Query 21880 TCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGT 21939 ||||||||||| || || || |||| | || | || || | | ||| | | | Sbjct 245986 GCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTT 245927 Query 21940 TAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCT 21999 | ||||| |||||| | ||| || ||| | || |||||||| ||||||||| Sbjct 245926 CAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGA 245867 Query 22000 AGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 || | || || || || | |||| || ||| | ||| |||||| | ||||| Sbjct 245866 TGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAA 245807 Query 22060 CCTGTT 22065 ||||| Sbjct 245806 TCTGTT 245801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531887947946920