Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq552 262 5e-65 seq1707 95.1 2e-14 >seq552 Length=297145 Score = 262 bits (290), Expect = 5e-65 Identities = 583/867 (67%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 33041 AAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACAT 33100 ||||||||| ||| |||||||| || || |||||||| || || ||||| | | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTT 246597 Query 33101 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATG 33160 ||||| |||| || ||||||| | | || || || || || || || || || Sbjct 246596 TATAATACTTTTCAAGTCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACT 246537 Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTA-ACTGGAAGAGCCGCAGTAAGAAAT 33219 | ||| | ||||| || || | | | || | ||| || | |||| | Sbjct 246536 CTGCCATGGAGTGGCAATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAA-T 246478 Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 33279 |||| || |||| |||||||| || ||| ||||| |||| | || || Sbjct 246477 TCTTTCTCTATGGCAACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTC 246418 Query 33280 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33339 ||| |||||| ||| |||| ||||| ||||| ||||| || || ||||| || | Sbjct 246417 TGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAA 246358 Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || | || || ||||| || || || ||||||||||| | || || | |||||| || Sbjct 246357 ATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATT 246298 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || || || | ||||| ||||| || || || || || ||||| |||| || ||| || Sbjct 246297 GATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCA 246238 Query 33460 CCATAACCGGCGCTGT----CATGTATCCA--CTTTTGA--GCCCAATCGGCCTTCTTTT 33511 ||| || | ||||| | | |||||| | ||| | ||||| | ||||| |||| Sbjct 246237 CCAAAA--GTAGCTGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTT 246180 Query 33512 TTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA--TCTTT 33569 | ||||| || | ||||| || ||||| || | | | || || | || || | Sbjct 246179 TAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCCCT 246122 Query 33570 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33629 | ||||| || || || |||| |||||||| || ||||||||||| ||||| || || Sbjct 246121 GATGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTG 246062 Query 33630 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAA 33689 |||||||||||||||||| ||||||| || |||| || | | || | ||| |||| Sbjct 246061 AAATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAA 246002 Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 || || ||||| || ||||||||||| || ||||||| |||||| || || | Sbjct 246001 GTTCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTG 245942 Query 33750 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 33809 |||||| | | | ||||| | |||||| | || || | || |||||||| Sbjct 245941 TTTTTCTTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTC 245882 Query 33810 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGAT 33869 || |||||||| |||||| | | || || || | ||||| |||||| | | | Sbjct 245881 GACCGTCCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAG 245822 Query 33870 TGGGAAAATAACAAATCTATTTGGATT 33896 ||| || | |||||||| || ||||| Sbjct 245821 TGGAAACAAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 63254 AAATAGATCTCTGGTTCTA--TGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAA 63310 |||||||||||| | || ||||| || |||||||| ||||| ||||| || | ||| Sbjct 223604 AAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTGTTCTTCCTTAAG-TCCAAGAA 223662 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | ||||| ||||| |||||||||||||| || | |||| || | ||||| Sbjct 223663 ATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGTT 223722 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||||| || || | || || || || ||| ||||| | |||||| || | | ||| Sbjct 223723 GCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGACC 223782 Query 63431 GTTTGATATACCATTGGT 63448 |||||| | |||||||| Sbjct 223783 GTTTGAGACTCCATTGGT 223800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932148038280