Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq552 271 1e-67 seq1707 84.2 3e-11 >seq552 Length=297145 Score = 271 bits (300), Expect = 1e-67 Identities = 585/867 (67%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 32398 AAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACAT 32457 ||||||||| ||| ||||| || || || |||||||| || ||| ||||| | | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTT 246597 Query 32458 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 32517 ||||| |||| || ||||||| | | || || || || ||||| || || || Sbjct 246596 TATAATACTTTTCAAGTCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACT 246537 Query 32518 TTTTCATCATTTCACAATTCATTCCTATAAGTTTA-ACTGGAAGAGCCACAGTAAGAAAT 32576 | ||| | ||||| || || | | | || | ||| || | |||| | Sbjct 246536 CTGCCATGGAGTGGCAATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAA-T 246478 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA 32636 |||| || || | ||||| || || ||| || || |||| | || || Sbjct 246477 TCTTTCTCTATGGCAACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTC 246418 Query 32637 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTA 32696 | | |||||| ||| |||| ||||| ||||| ||||| || || ||||| || | Sbjct 246417 TGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAA 246358 Query 32697 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 32756 || || || || ||||| || || || ||||||||||| | || || | |||||| || Sbjct 246357 ATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATT 246298 Query 32757 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 32816 || ||||| | ||||| ||||| || || || || |||||||| |||| || ||| || Sbjct 246297 GATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCA 246238 Query 32817 CCATAACCGGCGCTGT----CATGTATCCA--CTTTTGA--GCCCAATCGGCCTTCTTTT 32868 ||| || | ||||| | | |||||| | ||| | ||||| | ||||| |||| Sbjct 246237 CCAAAA--GTAGCTGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTT 246180 Query 32869 TTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA--TCTTT 32926 | ||||| || | || || |||||||| || | | | || || | || || | Sbjct 246179 TAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCCCT 246122 Query 32927 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 32986 | || || ||||| || |||| |||||||| || ||||||||||| ||||| ||||| Sbjct 246121 GATGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTG 246062 Query 32987 AAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAA 33046 |||||||||||| ||||| ||||||| || |||| || | | || | ||| | || Sbjct 246061 AAATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAA 246002 Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 || || ||||| || ||||||||||| || ||||||| |||||| || || | Sbjct 246001 GTTCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTG 245942 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 |||||| | | | ||||| | |||||| | || || | ||||||||||| Sbjct 245941 TTTTTCTTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTC 245882 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 || |||||||| |||||| | | || || || | ||||| |||||| | | | | Sbjct 245881 GACCGTCCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAG 245822 Query 33227 TGGAAAAATAACAAATCTATTTGGATT 33253 |||||| | |||||||| || ||||| Sbjct 245821 TGGAAACAAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 63109 AAATAGATCTCTGGTTCTA--TGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAA 63165 |||||||||||| | || ||||| || |||||||| ||||| ||||| || | ||| Sbjct 223604 AAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTGTTCTTCCTTAAG-TCCAAGAA 223662 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | ||||| ||||| |||||||||||||| || | |||| || | ||||| Sbjct 223663 ATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGTT 223722 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||||| || || | || || || || ||| ||||| | |||||| || | | ||| Sbjct 223723 GCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGACC 223782 Query 63286 ATTGGATGTACCATTGGTC 63304 || || ||||||||| Sbjct 223783 GTTTGAGACTCCATTGGTC 223801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616689866800