Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq754 138 1e-27 seq506 86.0 5e-12 >seq754 Length=972672 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||||||||||| || ||||||| | ||||| ||| || Sbjct 126746 AATGCAGATTTTCGTTAAGACTTTGACCGGAAAGACCATCACGCTTGAAGTTGAGCCGAG 126687 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| ||||| ||| ||| ||||||||||| || || || ||||| Sbjct 126686 CGACTCCATTGAGAATGTGAAGACAAAGATCCAAGACAAAGAAGGCATCCCTCCCGACCA 126627 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || ||||| ||||| ||||||| ||||||| | |||| ||||| Sbjct 126626 ACAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTAGCGACTACAA 126567 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||| || || || || || ||| | ||| Sbjct 126566 TATTCAGAAGGAGTCGACCCTTCATCTGGTG 126536 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| ||||||| || ||||||| ||||||| ||| || Sbjct 126290 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACCATCACGCTCGAAGTCGAGCCGAG 126231 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | || || ||||| |||| | ||| ||||||||||| ||||| || |||| Sbjct 126230 CGACTCCATTGAAAATGTGAAGACAAAGATTCAA-GACAAAGAAGGCATTCCCCCAGACC 126172 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | || || ||||| || || || ||||||| ||||||| | |||| |||| Sbjct 126171 AACAGAGGCTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTTAGCGACTACA 126112 Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202 ||||||| || || || || || ||| Sbjct 126111 ATATTCAGAAGGAGTCGACCCTTCAT 126086 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||||||| | ||||| | ||||| || | Sbjct 126973 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCAAGC 126914 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||| ||||||| ||||| | || | ||| ||||||||||| || ||||| || || Sbjct 126913 GACAGTATCGAGAATGTGAAGACGAAGATTCAA-GACAAAGAAGGCATCCCACCCGATCA 126855 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||||||| | ||||||| || ||| || | ||||| || Sbjct 126854 ACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTATAA 126795 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| ||||| || || Sbjct 126794 CATTCAGAAAGAGTCCACTCTTCA 126771 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||||| ||| ||||||| | ||||| ||| | Sbjct 126517 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC 126458 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || ||||| || ||| ||||||||||| || || || ||||| Sbjct 126457 GACTCCATTGAAAATGTGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 126398 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || || || ||||||| ||||||| | |||| ||||| Sbjct 126397 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAAC 126338 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||| ||||| || || | || || | || ||||| |||| Sbjct 126337 ATTCAAAAAGAGTCCACTCTTCACCTTGTTCTTCGTCTGAGAGGTGGAA 126289 >seq506 Length=2789561 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||||||||| || | | |||||||| || ||||| | ||||||| || Sbjct 445475 AGGAATTCCACCTGACCAGCAAAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGACG 445534 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 |||| | | ||||| || || || || || ||||| || ||| | ||||| | || || Sbjct 445535 CACTCTTAGTGATTATAACATCCAGAAGGAGTCCACTCTTCATCTTGTGCTTCGACTGAG 445594 Query 25220 AGGAGGA 25226 ||||||| Sbjct 445595 AGGAGGA 445601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317791469395