Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq552 259 5e-64 seq502 86.0 7e-12 >seq552 Length=297145 Score = 259 bits (286), Expect = 5e-64 Identities = 651/981 (66%), Gaps = 29/981 (3%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACA---TTGTCAAGTGGATTCTTATTCATAACACCA 92799 || ||||| ||||| || || |||||| || || | ||| |||||| || ||| Sbjct 246744 TAAAAATCAGCATCAAGGGTGAATACAAAATTTTCCCATC---TCTCATTCATGACTCCA 246688 Query 92800 CATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATC 92859 | |||||| || || |||||| ||| | ||||| | || ||||||||||| || Sbjct 246687 CTTTTTTGATACTCTGAAACTTTCCGCTCATAAAAATTAGCTTTGCCTTCCAAAGAAAT- 246629 Query 92860 GAATTCACTA---GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA 92916 | ||| || | || ||||| || | ||||||||||||||| ||| | Sbjct 246628 GTTTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAGTCCCAATGCCAC 246569 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| | || || || ||||| || ||||||| | ||| | | ||||| || || | Sbjct 246568 CAACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGCAATTGATACCCAA 246509 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| ||| |||| || | || |||| |||||||| || |||| || || | Sbjct 246508 CAAACG-ACACGGTAAGGCCCCTATCCAGAATTCTTTCTCTATGGCAACCGCATCACATA 246450 Query 93036 AGATTTCTATTACTC-TACTAT--TTGG----TGGTTTTTGTACGACATAATTGTACATT 93088 || || | || | | || |||| || || | ||| | ||| Sbjct 246449 CAATCTCGCTAACCCGTTCTCCGCTTGGCCTCTGCCTTAAATGCGAAAAAATC------- 246397 Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 | ||| ||||| || || | |||||||| | || ||||||||||| ||||| Sbjct 246396 AGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTC 246337 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | || |||| |||||||| |||||| ||||| ||||| |||||| || Sbjct 246336 AGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAG 246277 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 ||||| || || || || ||||| || |||| | ||| ||||| | || | | ||| Sbjct 246276 AATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTT 246217 Query 93269 CT---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | |||||||| || ||||| | || ||||| |||| ||| || | ||||| ||| Sbjct 246216 TTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATA 246157 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || || || | | || ||| | | || | ||||| || || ||||||||| | Sbjct 246156 GCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGACAG 246097 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||||||| || || | || ||||| || ||||| ||||||||||||||||| || || Sbjct 246096 TACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCG 246037 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | | || | || || | || || || || | || || ||||| ||||| Sbjct 246036 GGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTG 245977 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 ||||| || || |||| | ||| || || ||||| || | | || || || ||| Sbjct 245976 GCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTTCC 245917 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||||| || || ||| || || ||||||||||| |||||||| ||||| | | | Sbjct 245916 CAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCACAGAT 245857 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 || ||||| | | ||||||||| | | | | |||||| | |||||| | || || Sbjct 245856 TTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAATCTGTTGGGA 245797 Query 93686 TTATCTTTTAGTAACGGCTCT 93706 || || | || ||||||||| Sbjct 245796 TTGTCCTGAAGCAACGGCTCT 245776 >seq502 Length=1712060 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| ||||| |||||||| || ||||||||||| || || | | ||| ||||| || Sbjct 404522 CTCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCT 404463 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | ||| || | ||||||||||| || |||||| || || || ||||| | | Sbjct 404462 GAAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAAC 404403 Query 93526 ATGCTTTATAAAATGTTTCTCATCATC 93552 |||||| || |||| | |||||||| Sbjct 404402 ATGCTTGATGAAATACCTTTCATCATC 404376 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| ||||| |||||||| || ||||||||||| || || | | ||| ||||| || Sbjct 408773 CTCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCT 408714 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | ||| || | ||||||||||| || |||||| || || || ||||| | | Sbjct 408713 GAAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAAC 408654 Query 93526 ATGCTTTATAAAATGTTTCTCATCATC 93552 |||||| || |||| | |||||||| Sbjct 408653 ATGCTTGATGAAATACCTTTCATCATC 408627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847344850920