Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20]
1,933 sequences; 485,548,939 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq552 259 5e-64
seq502 86.0 7e-12
>seq552
Length=297145
Score = 259 bits (286), Expect = 5e-64
Identities = 651/981 (66%), Gaps = 29/981 (3%)
Strand=Plus/Minus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACA---TTGTCAAGTGGATTCTTATTCATAACACCA 92799
|| ||||| ||||| || || |||||| || || | ||| |||||| || |||
Sbjct 246744 TAAAAATCAGCATCAAGGGTGAATACAAAATTTTCCCATC---TCTCATTCATGACTCCA 246688
Query 92800 CATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATC 92859
| |||||| || || |||||| ||| | ||||| | || ||||||||||| ||
Sbjct 246687 CTTTTTTGATACTCTGAAACTTTCCGCTCATAAAAATTAGCTTTGCCTTCCAAAGAAAT- 246629
Query 92860 GAATTCACTA---GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA 92916
| ||| || | || ||||| || | ||||||||||||||| ||| |
Sbjct 246628 GTTTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAGTCCCAATGCCAC 246569
Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
||| | || || || ||||| || ||||||| | ||| | | ||||| || || |
Sbjct 246568 CAACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGCAATTGATACCCAA 246509
Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035
| ||| ||| |||| || | || |||| |||||||| || |||| || || |
Sbjct 246508 CAAACG-ACACGGTAAGGCCCCTATCCAGAATTCTTTCTCTATGGCAACCGCATCACATA 246450
Query 93036 AGATTTCTATTACTC-TACTAT--TTGG----TGGTTTTTGTACGACATAATTGTACATT 93088
|| || | || | | || |||| || || | ||| | |||
Sbjct 246449 CAATCTCGCTAACCCGTTCTCCGCTTGGCCTCTGCCTTAAATGCGAAAAAATC------- 246397
Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148
| ||| ||||| || || | |||||||| | || ||||||||||| |||||
Sbjct 246396 AGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTC 246337
Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208
| ||| || | || |||| |||||||| |||||| ||||| ||||| |||||| ||
Sbjct 246336 AGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAG 246277
Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268
||||| || || || || ||||| || |||| | ||| ||||| | || | | |||
Sbjct 246276 AATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTT 246217
Query 93269 CT---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325
| |||||||| || ||||| | || ||||| |||| ||| || | ||||| |||
Sbjct 246216 TTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATA 246157
Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385
|| || || | | || ||| | | || | ||||| || || ||||||||| |
Sbjct 246156 GCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGACAG 246097
Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445
|||||||| || || | || ||||| || ||||| ||||||||||||||||| || ||
Sbjct 246096 TACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCG 246037
Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505
| | || | || || | || || || || | || || ||||| |||||
Sbjct 246036 GGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTG 245977
Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565
||||| || || |||| | ||| || || ||||| || | | || || || |||
Sbjct 245976 GCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTTCC 245917
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|||||| || || ||| || || ||||||||||| |||||||| ||||| | | |
Sbjct 245916 CAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCACAGAT 245857
Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685
|| ||||| | | ||||||||| | | | | |||||| | |||||| | || ||
Sbjct 245856 TTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAATCTGTTGGGA 245797
Query 93686 TTATCTTTTAGTAACGGCTCT 93706
|| || | || |||||||||
Sbjct 245796 TTGTCCTGAAGCAACGGCTCT 245776
>seq502
Length=1712060
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465
||| ||||| |||||||| || ||||||||||| || || | | ||| ||||| ||
Sbjct 404522 CTCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCT 404463
Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525
|| | ||| || | ||||||||||| || |||||| || || || ||||| | |
Sbjct 404462 GAAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAAC 404403
Query 93526 ATGCTTTATAAAATGTTTCTCATCATC 93552
|||||| || |||| | ||||||||
Sbjct 404402 ATGCTTGATGAAATACCTTTCATCATC 404376
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465
||| ||||| |||||||| || ||||||||||| || || | | ||| ||||| ||
Sbjct 408773 CTCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCT 408714
Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525
|| | ||| || | ||||||||||| || |||||| || || || ||||| | |
Sbjct 408713 GAAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAAC 408654
Query 93526 ATGCTTTATAAAATGTTTCTCATCATC 93552
|||||| || |||| | ||||||||
Sbjct 408653 ATGCTTGATGAAATACCTTTCATCATC 408627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556847344850920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |