Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq754 163 5e-35 >seq754 Length=972672 Score = 163 bits (180), Expect = 5e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||| || || || ||||| || || || || || ||| Sbjct 126063 CCGCCACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126122 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| |||||||| |||||||| || || || |||||||| || ||| Sbjct 126123 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 126182 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| |||||||||||||||| ||| || || |||| ||| ||| | || || Sbjct 126183 ATGCCTTCTTTGTCTTGAATCTTTGTCTTCACATTTTCAATGGAGTC-GCTCGGCTCGAC 126241 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | |||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 126242 TTCGAGCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 126290 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||| || || || ||||| || || || || || ||| Sbjct 126519 CCGCCACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126578 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || ||||| || ||||| ||||||||||| || Sbjct 126579 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGG 126638 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| |||||||| ||||||| ||| || ||| |||| ||| ||| | || || Sbjct 126639 ATGCCTTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTC-GCTCGGCTCAAC 126697 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | |||||||| ||||| || | ||||| ||||| ||||||||| Sbjct 126698 TTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 Score = 154 bits (170), Expect = 3e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||||||||| || ||||||||||| || || | |||||||| | || Sbjct 126770 GTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCAAGTTG 126829 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || ||||| ||||| | ||||| |||||||| |||||||| |||||||||||||| Sbjct 126830 TTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTCTTGAATCTT 126889 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||| || |||||| |||| || ||| ||||| | ||||| ||||| || || Sbjct 126890 CGTCTTCACATTCTCGATACTGTCGCTTGGTTCAACTTCAAGAGTGATAGTTTTACCGGT 126949 Query 68438 GAGGGTCTTGACGAATATCTGCATTATG 68465 || ||||| ||||| |||||||| ||| Sbjct 126950 CAGAGTCTTCACGAAGATCTGCATGATG 126977 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||||||||| ||||| || ||| ||| || | |||||||| ||||| Sbjct 126314 GTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTGAGAGTGCGACCATCTTCCAACTG 126373 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 126374 CTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTT 126433 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||| || || |||| ||| || || ||||| | ||||||||||| || || Sbjct 126434 CGTCTTCACATTTTCAATGGAGTCGCTTGGCTCGACTTCAAGCGTGATGGTTTTGCCGGT 126493 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| |||||||| Sbjct 126494 CAGGGTTTTCACGAAGATCTGCAT 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921600131298760