Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq754 161 2e-34 seq808 84.2 5e-11 >seq754 Length=972672 Score = 161 bits (178), Expect = 2e-34 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | | || ||||||| || || || || ||||| |||||| Sbjct 126063 CCGCCACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126122 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || ||||| ||||||||||| | |||||| |||||| Sbjct 126123 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTG---GTCTGGG 126179 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || || || || | ||||| ||||| || || ||||||| || Sbjct 126180 GGAATGCCTTCTTTGTCTTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCG 126239 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 126240 ACTTCGAGCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 126290 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | | || ||||||| || || || || ||||| |||||| Sbjct 126519 CCGCCACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126578 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| ||||| || || ||||||||||| | |||||| ||| Sbjct 126579 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGG 126638 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||| || | ||||| || || || || ||||||| || ||| Sbjct 126639 ATGCCTTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACT 126698 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| ||||| ||||||| |||||| ||||| ||||||||| Sbjct 126699 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || || |||| ||| ||||| || || ||||| || || || || || || Sbjct 126761 AAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATC 126820 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | |||||| || ||||| || |||||||||||| |||||| |||||||| || Sbjct 126821 TTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTC 126880 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || || |||| ||||| || || ||| ||||| | ||| ||||| || ||||| || Sbjct 126881 TTGAATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCAACTTCAAGAGTGATAGT 126940 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || |||||||||||||| ||||| |||||||| ||| Sbjct 126941 TTTACCGGTCAGAGTCTTCACGAAGATCTGCATGATG 126977 >seq808 Length=2620824 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| |||||||||||||| | |||||| ||||| || ||||| | ||| || || Sbjct 1042448 CCTTCCTTATCCTGGATTTTAGTTTTCACATTTTCGATGGAATCTGAAGGTTCCACCTCA 1042389 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| || || || || || || |||||||| Sbjct 1042388 AGGGTGATAGTCTTCCCTGTAAGGGTTTTCACAAAGATCTGCAT 1042345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625184015574