Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq552 98.7 1e-15 >seq552 Length=297145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || || ||||| | ||| || | ||||| || || |||||| Sbjct 246390 GCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGACCA 246331 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || | ||||| | ||| ||||| | ||| | ||||||||||| ||| Sbjct 246330 GGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAATATC 246271 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGG--GACTTTGTATCA 127696 ||||| ||| ||| ||||||| | | || | |||| ||| | || || |||| Sbjct 246270 CCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTATCC 246211 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | ||| || | ||||||||||||||||| | | ||| |||| || | || || | Sbjct 246210 ATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGCATTG 246151 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 || | | || ||| ||| ||| || ||||||| Sbjct 246150 AAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTA 246116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492376132280