Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq754 132 1e-25 >seq754 Length=972672 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGTCCTTCCATCTTC 199479 || || || || ||||||||||| || | |||||||| || || ||| | |||||||| Sbjct 126081 ACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTC-GCTAAGAGTGCGACCATCTTC 126139 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || |||||||||||||||||| || | ||| ||||| || ||| |||||| || || Sbjct 126140 CAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTG 126199 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||||||| |||||| ||| | || ||| | | || || || | |||||| ||||| Sbjct 126200 AATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGAGCGTGATGGTCTT 126259 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| ||||| || Sbjct 126260 TCCGGTCAGAGTCTTCACGAAAATCTG 126286 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| ||||| ||||| | ||||||||| | ||| | |||||| Sbjct 126306 AGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTGAGAGTGCGACCATCT 126365 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||| | | ||||||||| || || |||||| ||| Sbjct 126366 TCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCC 126425 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| ||| | || ||| ||| || || || | |||||| || Sbjct 126426 TGGATCTTCGTCTTCACATTTTCAATGGAGTCGCTTGGCTCGACTTCAAGCGTGATGGTT 126485 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| || || || Sbjct 126486 TTGCCGGTCAGGGTTTTCACGAAGATCTG 126514 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| ||||| || || | ||| || ||| || ||| | |||||| Sbjct 126762 AGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCT 126821 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| ||||||||||| || || || || |||||| || Sbjct 126822 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTCT 126881 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| |||| ||| ||| || || | ||||| || Sbjct 126882 TGAATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCAACTTCAAGAGTGATAGTT 126941 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| || || || Sbjct 126942 TTACCGGTCAGAGTCTTCACGAAGATCTG 126970 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGTCCTTCCATCTTC 199479 || || || || ||||||||||| || | |||||||| || || ||| | |||||||| Sbjct 126537 ACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTC-GCTAAGAGTGCGACCATCTTC 126595 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || ||||| || |||||||| || | ||| ||||| ||| || |||||| || || Sbjct 126596 CAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTG 126655 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| |||||| || | || ||| | | || || || | |||||| ||||| Sbjct 126656 GATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAGCGTGATGGTCTT 126715 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | ||| || || ||||| || Sbjct 126716 TCCGGTCAAAGTCTTAACGAAAATCTG 126742 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||||||||||||||||||||| | ||| | ||| |||||| | || ||| Sbjct 126388 ATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAACATTCAAAAA 126329 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| ||||||||||||||| Sbjct 126328 GAGTCCACTCTTCACCTTGTT 126308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178892402164511