Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq552 208 8e-49 seq754 123 2e-23 seq502 93.3 4e-14 >seq552 Length=297145 Score = 208 bits (230), Expect = 8e-49 Identities = 608/930 (65%), Gaps = 21/930 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||||||| || || || |||| ||||||||| ||| || || Sbjct 246697 CATGACTCCACTTTTTTGATACTCTGAAACTTTCCGCTCATAAAAATTAGCTTTGCCTTC 246638 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG----GTGC 132706 ||| |||||| |||||| || || || || || || | ||| || | Sbjct 246637 CAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAGTCC 246578 Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGC 132766 | || | || | |||||||||||| || ||||| ||||| | | ||||| | || Sbjct 246577 CAATG----CCACCAACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGC 246522 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTG-AGAAAGCGTTGCTCGATGGCG 132825 |||| | |||| || ||| ||| | || | | |||| | || ||| ||||| Sbjct 246521 AATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAATTCTTT-CTCTATGGCA 246463 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 ||||| || || || || ||||| || | |||| |||| ||| |||||| Sbjct 246462 ACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTCTGCCTTAAATGCGAA 246403 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || |||| ||| ||||| || || || | ||| |||||||||||||| | || || Sbjct 246402 AAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAA 246343 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||| || ||||| ||||| | ||| |||| |||||| || | || || || Sbjct 246342 AATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCA 246283 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT--- 133062 || ||||| | |||||||| ||||| || || || | | || || || || ||| Sbjct 246282 GAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTA 246223 Query 133063 --TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG 133120 |||| | | ||||| | ||||| | ||||||| ||| || || || | | Sbjct 246222 GAACTTT--TATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAG 246165 Query 133121 TTTCGATGGCGTTCAACAAACGGAGT--TTCTCTTCCGAGGAACGCACGTAGGTGTCGAT 133178 |||| || || || | |||| | |||||| | | | | | ||| ||||| || Sbjct 246164 TTTCAATAGCATTGA--AAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAAT 246107 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | | |||||||| ||||| | ||| ||||||||||||||||| ||||| || || Sbjct 246106 TAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACA 246047 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 | |||||| || || | || || ||| | ||||||| || || || || Sbjct 246046 TCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTAT 245987 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||| || ||||| ||||| || ||||| || || ||||| || || | ||| Sbjct 245986 GCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTT 245927 Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 || ||||| ||| ||| || ||||||||| || ||||| |||||||| || Sbjct 245926 CAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGA 245867 Query 133419 CGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAA 133478 ||| | | ||| ||||| | |||| ||||| | | | || ||||| | ||||| Sbjct 245866 TGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAA 245807 Query 133479 CCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 | | ||| || || | | || |||||| Sbjct 245806 TCTGTTGGGATTGTCCTGAAGCAACGGCTC 245777 >seq754 Length=972672 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || |||||||||||||| | || |||||| | | | Sbjct 126517 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC 126458 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | ||| | | |||| || |||| |||||||| || || ||| | |||| Sbjct 126457 GACTCCATTGAAAATG--TGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACC 126400 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | ||| || || ||| |||| || | ||||| |||| |||||||| Sbjct 126399 AGCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACA 126340 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| || | || || || | || || ||| ||||||| || Sbjct 126339 ACATTCAAAAAGAGTCCACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 126291 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || |||||||| | || || ||| | | Sbjct 126746 AATGCAGATTTTCGTTAAGACTTTGACCGGAAAGACCATCACGCTTGAAGTTGAGCCGAG 126687 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | || | | |||| ||| |||| |||||||| || || || ||||| Sbjct 126686 CGACTCCATTGAGAATG--TGAAGACAAAGATCCAAGACAAAGAAGGCATCCCTCCCGAC 126629 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||| | || || | ||| ||||| || |||| || | ||||| || | ||||||| Sbjct 126628 CAACAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTAGCGACTAC 126569 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||||| |||| || ||| ||||| ||||| | | ||||| Sbjct 126568 AATATTCAGAAGGAGTCGACCCTTCATCTGGTGTTGCGTCTCCGTGGCGG 126519 >seq502 Length=1712060 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 ||| || || ||||| ||||| || || || | ||||| ||||| ||||| || Sbjct 404522 CTCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCT 404463 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||||| ||| |||| ||||| ||||| ||||| ||||| || ||||| || || || || Sbjct 404462 GAAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAAC 404403 Query 133329 GTGCTTGATGAAAT 133342 ||||||||||||| Sbjct 404402 ATGCTTGATGAAAT 404389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 ||| || || ||||| ||||| || || || | ||||| ||||| ||||| || Sbjct 408773 CTCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCT 408714 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||||| ||| |||| ||||| ||||| ||||| ||||| || ||||| || || || || Sbjct 408713 GAAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAAC 408654 Query 133329 GTGCTTGATGAAAT 133342 ||||||||||||| Sbjct 408653 ATGCTTGATGAAAT 408640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160714574720