Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1888 131 7e-25 seq1148 125 3e-23 seq754 125 3e-23 >seq1888 Length=1284944 Score = 131 bits (144), Expect = 7e-25 Identities = 403/612 (66%), Gaps = 16/612 (3%) Strand=Plus/Minus Query 451890 AAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGT 451949 |||| |||| |||| | || || || || || ||||| || ||||||||||| || Sbjct 553620 AAATCCATGAGGTTGTCTTGGTTGGTGGCTCAACTCGAATCCCAAAAATTCAAGACCTGC 553561 Query 451950 TGTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTG 452009 | || ||||| ||| ||| | |||||| | || || || || ||||||| Sbjct 553560 TAAAAAACTACTTTGGC---AAAGAACCAAACAAGAGCATCAACCCCGACGAGGCTGTTG 553504 Query 452010 CATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAAT-TAGGA 452068 | |||||||||||||| || ||||| || || || | | | | || || | | Sbjct 553503 CTTATGGTGCTGCAGTCCAGGCAGCCAT-CTTGCACGGTGACAAGAGCGAAGCTGTCTCT 553445 Query 452069 GATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATG 452128 || | ||| | | ||||| | || | |||||||| | || ||||||||||| | Sbjct 553444 GACCTCCTGCTTCTGGATGTGGCTCCCTTGTCTCTTGGTATCGAGACAGCTGGTGGTGTT 553385 Query 452129 ATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGT 452188 ||||| | | || | |||| ||| | || || || ||||||||||| || | Sbjct 553384 ATGACATCTCTGATCACACGAAACACTACAATCCCAACAAAGAAGAGTCAAACCTTCACC 553325 Query 452189 ACA---GCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCA 452245 ||| ||| || |||||||| | ||| || || || | ||||| |||||| Sbjct 553324 ACATATGCA---GACAACCAACCTGCTGTGTTGATCCAGGTATACGAAGGTGAACGTAGC 553268 Query 452246 ATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCA 452305 ||||| ||| ||| || |||| ||| ||||| || | ||| |||||| ||| Sbjct 553267 ATGACCAAAGACAATCATCAACTGGGAAAATTTGAGCTGACTGGCATCCCTCCTGCTCCA 553208 Query 452306 AGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTG 452365 | || || || ||||| | || | || |||||||| ||||| || | || || Sbjct 553207 CGTGGTGTGCCACAGATTGAGGTCACATTCGACGTTGATGCTAATGGAATCATGAACGTT 553148 Query 452366 AGTGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAA 452423 ||| || || |||| || |||||||| |||| || ||| || || ||||| || Sbjct 553147 TCTGCTGTGGACAAAAGCA-CTGGAAAA-GAGAACAAGATTGTCATCACAAATGACAAGG 553090 Query 452424 ACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATG 452483 ||||| || || ||||| || ||| ||||| | || || || |||| ||| | | Sbjct 553089 GACGTTTGTCCAAGGAAGACATAGAACGCATGGTGAAAGATGCTGAGAAATACAAAGCAG 553030 Query 452484 ATGATGAACAAG 452495 |||| | ||||| Sbjct 553029 ATGACG-ACAAG 553019 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || |||||||| ||||||||||| ||||| || ||| ||| |||| | Sbjct 555076 ATATCTTCAATGGTTCTGACTAAAATGAAGGAAACTGCGGAAGCTTATCTTGGCGAGAAA 555017 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||||| ||||| | |||||||| || |||||||||||| |||| |||| || || Sbjct 555016 GTGACTGACGCAGTTGTCACTGTTCCAGCATATTTCAATGATTCACAGAGGCAGGCCACC 554957 Query 451373 AAAGATGCAGG 451383 |||||||| || Sbjct 554956 AAAGATGCCGG 554946 >seq1148 Length=1039997 Score = 125 bits (138), Expect = 3e-23 Identities = 263/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 451232 aaaaCTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 |||| |||| |||| |||||||| || |||||||| || ||||||||||| | ||| Sbjct 352593 AAAAGTTTTACTCCAGAAGAAATCAGCTCCATGGTTCTGACGAAAATGAAAGAGATAGCT 352652 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| || | || |||| || || ||||| || || || || || |||||||| Sbjct 352653 GAAGCTTACTTGGGCGAGACAGTGACGGACGCAGTCATCACAGTGCCAGCATATTTCAAC 352712 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||| |||| || || || |||||||| || |||| || || || | ||||| || Sbjct 352713 GATTCACAGCGACAGGCCACTAAAGACGCTGGACTAATAGCGGGGCTGAATGTCAAGAGA 352772 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA 451471 || || |||||||| || || || ||| | || || ||| | |||||| || | Sbjct 352773 ATCATCAATGAACCCACGGCTGCCGCTGTCGCGTACGGA-TTGGAAAA--GAACCTCAGC 352829 Query 451472 GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTT 451531 | ||||| || | | | || ||| | ||||||||||| ||| |||||||| Sbjct 352830 GGGGAAAAGAACGTCCTGATTTTCGATCTCGGTGGAGGAACCTTTGACGTCTCTGTACTG 352889 Query 451532 TCAATTGAAGATGG---GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGA 451588 |||| || || || | | ||||| ||| || | || || | || ||||| || Sbjct 352890 ACAATAGACGAAGGATCGTTCTTTGAGGTACAGTCCACAGCCGGCAACACACATCTCGGT 352949 Query 451589 GGTGAAGATATTGATAATGCAATTGTGGA 451617 || |||||| | || ||| ||||||| Sbjct 352950 GGAGAAGATTTCGACAATCGCGTTGTGGA 352978 >seq754 Length=972672 Score = 125 bits (138), Expect = 3e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| || || ||||| ||||||||||| |||||||| |||||| || Sbjct 126976 ATCATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCA 126917 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || | || || | | || || |||||||| || ||||| || || || ||| Sbjct 126916 AGCGACAGTATCGAGAATGTGAAGACGAAGATTCAAGACAAAGAAGGCATCCCACCCGAT 126857 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||| ||| | |||||| | || ||||||||||||||||| | ||| || |||||| Sbjct 126856 CAACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTAT 126797 Query 391227 AATATTGATAAGGATGCAACACTTCAC 391253 || ||| | || || | || |||||| Sbjct 126796 AACATTCAGAAAGAGTCCACTCTTCAC 126770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975669468246764