Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq552 82.4 9e-11 seq502 82.4 9e-11 >seq552 Length=297145 Score = 82.4 bits (90), Expect = 9e-11 Identities = 176/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| || || | || | || || |||| | || ||| || |||| || || | Sbjct 246134 GAGAAGGAGAAGGTTTTCAATGCTATTGAAACTTTCCCCTGTGTTAAAAAAAAGGCACAG 246193 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTC----GCGTTCCTTTGCTGAGCGACTCTTCGC 102193 ||||| | || ||| | |||| || || || | | |||| ||| || | | || Sbjct 246194 TGGGCATTTAAATGGATGGATAAAAGTTCTACAGC-TACTTTTGGTGAAAGAGTTGTTGC 246252 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCA 102252 |||||| ||| ||||| || |||||||||||| | || ||| | |||| |||| ||| Sbjct 246253 GTTTGCGGCTGTCGAGGGGATATTCTTCTCTGGTGCGTT-TGCATCAATTTTTTGGATCA 246311 Query 102253 AGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 |||| |||| || ||||| ||||| || || || ||| | || || | ||||| | Sbjct 246312 AGAAAAGAGGCCTAATGCCTGGTCTGACATTTTCTAATGAGTTGATTTCCAGGGACGAAG 246371 Query 102313 GACTCCACCAAGAGTTTGC 102331 | || ||| || ||||| Sbjct 246372 GCCTTCACTGTGATTTTGC 246390 >seq502 Length=1712060 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 102543 AAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAA 102602 || || |||||||||||||||||||||||| | | || |||||||||||||||||||| Sbjct 406164 AAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAAGGGAAGACAAACTTCTTCGAG 406223 Query 102603 AAGAGGGT 102610 ||||| || Sbjct 406224 AAGAGAGT 406231 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 102543 AAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAA 102602 || || |||||||||||||||||||||||| | | || |||||||||||||||||||| Sbjct 410416 AAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAAGGGAAGACAAACTTCTTCGAG 410475 Query 102603 AAGAGGGT 102610 ||||| || Sbjct 410476 AAGAGAGT 410483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727401311760