Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq754 172 1e-37 seq506 93.3 9e-14 >seq754 Length=972672 Score = 172 bits (190), Expect = 1e-37 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | |||||| || ||||| || ||||| || ||||||||||| ||| |||||| | Sbjct 126071 GAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCG 126130 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || |||||||| || | ||||||||||| ||||||||||| Sbjct 126131 ACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTC 126190 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||||||| ||| ||| || || ||||||| ||| || ||||| || || Sbjct 126191 TTTGTCTTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGAGCGT 126250 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| |||| ||| || ||||| | |||||| Sbjct 126251 GATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 126290 Score = 172 bits (190), Expect = 1e-37 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || ||||| || ||||| || ||||||||||| ||| |||||| | Sbjct 126527 GAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCG 126586 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||| || |||||||| |||| |||||||| ||||| |||||||| Sbjct 126587 ACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTC 126646 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || ||| ||| || |||||||||| ||| || |||||||| || Sbjct 126647 TTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAGCGT 126706 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| |||||||| || ||||| | |||||| Sbjct 126707 GATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 Score = 147 bits (162), Expect = 5e-30 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||| Sbjct 126308 AACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTGAGAGTGCGACCATCTTC 126367 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || |||||||| | | || |||||||| || || ||||||||||| || Sbjct 126368 CAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTG 126427 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 || || ||| || || ||||||| ||| ||| || |||||||| || | || Sbjct 126428 GATCTTCGTCTTCACATTTTCAATGGAGTC---GCTTGGCTCGACTTCAAGCGTGATGGT 126484 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| ||||| | ||||| Sbjct 126485 TTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 126517 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||||||||||||||| ||||| || ||||| ||||| | |||||||| Sbjct 126764 AACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTC 126823 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || ||||| || || || ||||| || || || ||||||||||||||||| Sbjct 126824 AAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTCTTG 126883 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || ||||| || |||| ||| |||||||| || | || || Sbjct 126884 AATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCAACTTCAAGAGTGATAGTTTT 126943 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | ||||| Sbjct 126944 ACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 >seq506 Length=2789561 Score = 93.3 bits (102), Expect = 9e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 445595 TCTCAGTCGAAGCACAAGATGAAGAGTGGACTCCTTCTGGATGTTATAATCACTAAGAGT 445536 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||||||||| ||||| || || || | || ||| ||||| || ||||| || Sbjct 445535 GCGTCCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTTTGCTGGTCAGGTGGAATTCC 445476 Query 195039 T 195039 | Sbjct 445475 T 445475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109454121954611