Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq552 306 4e-78 seq1707 93.3 5e-14 >seq552 Length=297145 Score = 306 bits (338), Expect = 4e-78 Identities = 432/604 (72%), Gaps = 5/604 (1%) Strand=Plus/Minus Query 18951 AAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 ||| |||| |||||||||||||| || || || ||||| || ||||| |||||||| Sbjct 246403 AAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGA 246344 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 |||||| | ||||||||| || |||||||| || | ||| || || || ||||| | || Sbjct 246343 AAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACC 246284 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGC--- 19127 ||| |||||||| || || || || ||||| ||||| | |||||| ||| || |||| Sbjct 246283 AGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGT 246224 Query 19128 ATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGT 19187 | | | |||| |||||||| | |||||| | ||||| ||||| ||||| || | || Sbjct 246223 AGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGT 246164 Query 19188 CTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 || |||| ||| || | | | ||| ||| || | | || | || || || Sbjct 246163 TTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAA 246104 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 | || ||||||||| || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 246103 CAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCT 246044 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 ||| || | | |||| || | | | || ||||||||||| || || |||||| || Sbjct 246043 TGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCC 245984 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 |||||| ||||| || || || | |||||| ||| || |||||||| | ||| | | Sbjct 245983 ATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAG 245924 Query 19428 TGTATTCCAATC-ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 | | | |||||| | ||| || || | || |||||||| || |||||||| || | Sbjct 245923 TTTTTCCCAATCGACTAA-GTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATG 245865 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATC 19546 || | | ||| || || | |||||||| ||| | | | || ||||| | ||||||| Sbjct 245864 CCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAATC 245805 Query 19547 TATT 19550 | || Sbjct 245804 TGTT 245801 >seq1707 Length=334361 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | || ||| ||||||| | || | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || ||||| |||||||| ||||| ||||| |||||||||||||||| | | || Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | || | || ||||| ||||| || || | | |||||| || || |||| Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGGGA 217498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095218046120