Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1148 233 2e-55 seq1888 134 1e-25 seq1911 102 7e-16 seq754 98.7 8e-15 >seq1148 Length=1039997 Score = 233 bits (258), Expect = 2e-55 Identities = 386/549 (70%), Gaps = 6/549 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | ||||| || ||| |||||||| || | ||| ||||||| Sbjct 352274 AGCGATCGGAATCGATCTTGGAACGACTTATTCCTGTGTTGGAGTCTTTCAACATGGTAA 352333 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||||||||| ||||| ||||||||||||||||| ||||| |||||| |||| | Sbjct 352334 AGTTGAAATTATCGCCAACGATCAAGGTAACAGAACAACTCCCAGCTATGTTGCTTTTTC 352393 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 |||||| |||| | | | || || ||||| || | ||||| || || || | ||| Sbjct 352394 GGAAACGGAACGTATGATCGGCGACGCAGCCAAGAACCAAGCAACATTGAACCCAAGCAA 352453 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | |||||||| || | |||| || || | ||| | || | |||||| || Sbjct 352454 CACTGTCTTTGATGCCAAGAGACTAATCGGCAGGAAGTTTGACGACCCTGATGTTCAAGC 352513 Query 550231 AGATATGAAG-CATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 || | |||| |||||||||||||| | | || | | || |||||| | || || Sbjct 352514 GGACA-GAAGTAATTGGCCTTTCCAAGTCATCAACGAGGCCGGGAAACCTAAAATCCGAG 352572 Query 550290 CTACTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGGTTTTA 550348 || | || || || || | |||| | |||||| |||| || |||||| | Sbjct 352573 -TAGAGACCAACGAGGGGTGGAAAAGTTTTACTCCAGAAGAAATCAGCTCCATGGTTCTG 352631 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407 | |||||||||| | | ||| || || |||| | ||| ||| ||||| ||||| || Sbjct 352632 ACGAAAATGAAAGAGATAGCTGAAGC-TTACTTGGGCGAGACAGTGACGGACGCAGTCAT 352690 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || ||||||||||| || || ||||| || || || |||||||| ||||||| || Sbjct 352691 CACAGTGCCAGCATATTTCAACGATTCACAGCGACAGGCCACTAAAGACGCTGGACTAAT 352750 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || ||||| | || ||||||||||| || ||||| || | || || || Sbjct 352751 AGCGGGGCTGAATGTCAAGAGAATCATCAATGAACCCACGGCTGCCGCTGTCGCGTACGG 352810 Query 550528 ACTTGATAA 550536 | | || || Sbjct 352811 ATTGGAAAA 352819 >seq1888 Length=1284944 Score = 134 bits (148), Expect = 1e-25 Identities = 451/695 (65%), Gaps = 13/695 (2%) Strand=Plus/Minus Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAAC 551959 ||||| | |||||||| || ||||||||||| | || || | || ||| |||| ||| | Sbjct 553828 CGTCGCTTGAGAACTGCATGTGAAAGAGCCAAGAGGACCT-TGTCTTCTAGTACCCAAGC 553770 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 || |||||| |||| || | || ||||| ||||| || || | | | || Sbjct 553769 CAACATTGAAATAGACTCTCTCTTCGAGGGCATTGACTACTATGTAACAGTCAGTCGCGC 553710 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 || |||||| | | | || || || | | || || ||||||||| ||| Sbjct 553709 AAAGTTTGAACAGGTAAATGACGACCTGTTCCGTGATACCATGGAACCAGTAACCAAAGC 553650 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 || | || || ||| | || || || | ||||| |||| | |||||||| || Sbjct 553649 CTTGAAGGACTCCAAGTTGGAAAAGGGAGAAATCCATGAGGTTGTCTTGGTTGGTGGCTC 553590 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAA 552199 || |||| || ||||||| || || ||| || || ||| ||| || ||| Sbjct 553589 AACTCGAATCCCAAAAATTCAAGACCTGCTAAAAAACTACTT---TGGCAAAGAACCAAA 553533 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | || | || || || ||||||||||| |||||||| ||| | || ||||| || || Sbjct 553532 CAAGAGCATCAACCCCGACGAGGCTGTTGCTTATGGTGCTGCAGTCCAGGCAGCCAT-CT 553474 Query 552260 TTCTGG---ACAAACTGAT-GAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTC 552315 | | | |||| || ||| | | | | ||| | ||||| |||| Sbjct 553473 TGCACGGTGACAA---GAGCGAAGCTGTCTCTGACCTCCTGCTTCTGGATGTGGCTCCCT 553417 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 | ||||||||| | || |||| ||| ||| ||||||| ||| ||| |||| |||| Sbjct 553416 TGTCTCTTGGTATCGAGACAGCTGGTGGTGTTATGACATCTCTGATCACACGAAACACTA 553357 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | || || || || || || | || ||| |||| || ||| ||||||| Sbjct 553356 CAATCCCAACAAAGAAGAGTCAAACCTTCACCACATATGCAGACAACCAACCTGCTGTGT 553297 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 || || | | ||||| ||| | | | || ||||| ||| ||||||| || | | Sbjct 553296 TGATCCAGGTATACGAAGGTGAACGTAGCATGACCAAAGACAATCATCAACTGGGAAAAT 553237 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 || | | || || ||||||||||| ||||| || || || ||||| || || |||| Sbjct 553236 TTGAGCTGACTGGCATCCCTCCTGCTCCACGTGGTGTGCCACAGATTGAGGTCACATTCG 553177 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | | ||||| |||||||| |||| || ||||| Sbjct 553176 ACGTTGATGCTAATGGAATCATGAACGTTTCTGCT 553142 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 |||| || ||| | || || || ||| ||||||||||||| ||| | |||||||| | Sbjct 555863 TAGGAATCGATCTCGGGACTACGTATTCCTGTGTTGGTGTTTTCCAACACGGTAAAGTAG 555804 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 |||| || || || ||||||||||| |||| ||||| ||||||| | |||||||||| Sbjct 555803 AAATAATCGCTAACGATCAAGGTAATCGAACAACTCCGAGTTATGTTGCCTTCACGGAAA 555744 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTA 550175 | ||| | | || || || || || |||||| | | |||||| | ||||| Sbjct 555743 CCGAAAGACTCATCGGGGACGCTGCCAAGAATCAAGTCGCCCTCAATCCTGCAAATACAG 555684 Query 550176 TTTT 550179 |||| Sbjct 555683 TTTT 555680 >seq1911 Length=3784159 Score = 102 bits (112), Expect = 7e-16 Identities = 305/466 (65%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 552114 CATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTC-GCGAAATGTTAAG 552172 ||||||||||| |||||||| || || || | || ||||| | | || ||| ||| Sbjct 1066500 CATGAAATTGTTCTTGTTGGAGGCTCAACTCGTATCCCTAAGGTCCAGCAGCTTGTCAAG 1066441 Query 552173 TTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTA 552232 || ||| | ||| || || || | | | || || || |||||||| ||||| Sbjct 1066440 GATTTCTTTGA-TGGCAAGGAACCAAGCCGAGGCATCAACCCTGACGAGGCTGTAGCCTA 1066382 Query 552233 TGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATA 552291 ||| || ||| |||| || | | | ||| ||| ||| | ||| | | Sbjct 1066381 TGGAGCAGCAGTTCAGGCTGGAGTGTTGGGTGG------TGAGGAAGATACTGGAGAGG- 1066329 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 | || || | ||||||| ||| || | | ||| | || ||||| || || | |||| Sbjct 1066328 TGGTGCTCCTTGATGTTAATCCACTTACCTTGGGTATTGAGACAGTGGGTGGAGTCATGA 1066269 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | || |||||| |||||| || ||||| || ||| | | ||||| || || Sbjct 1066268 CCAAACTTATCTCTAGAAACTCTGTCATTCCAACAAAGAAAGCCCAGGTATTCTCCACAG 1066209 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | | || || || | ||||||| ||||| | ||||| || |||||| | | || | Sbjct 1066208 CTGCTGACAACCAGAACACTGTTACCATTCAGGTATTTGAGGGGGAAAGACCAATGACCA 1066149 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 || | || ||| ||||| | ||| || | || || || |||||||| ||||| | Sbjct 1066148 AAAACAACCATCTTCTTGGCAAATTTGATCTCACTGGAATCCCACCTGCTCCACGTGGTG 1066089 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 | ||||||||||| || || || || || || | |||||| || || Sbjct 1066088 TGCCGCAAATTGAGGTCACCTTTGAAATTGACGTCAATGGTATCTT 1066043 Score = 102 bits (112), Expect = 7e-16 Identities = 305/466 (65%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 552114 CATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTC-GCGAAATGTTAAG 552172 ||||||||||| |||||||| || || || | || ||||| | | || ||| ||| Sbjct 1072641 CATGAAATTGTTCTTGTTGGAGGCTCAACTCGTATCCCTAAGGTCCAGCAGCTTGTCAAG 1072582 Query 552173 TTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTA 552232 || ||| | ||| || || || | | | || || || |||||||| ||||| Sbjct 1072581 GATTTCTTTGA-TGGCAAGGAACCAAGCCGAGGCATCAACCCTGACGAGGCTGTAGCCTA 1072523 Query 552233 TGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATA 552291 ||| || ||| |||| || | | | ||| ||| ||| | ||| | | Sbjct 1072522 TGGAGCAGCAGTTCAGGCTGGAGTGTTGGGTGG------TGAGGAAGATACTGGAGAGG- 1072470 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 | || || | ||||||| ||| || | | ||| | || ||||| || || | |||| Sbjct 1072469 TGGTGCTCCTTGATGTTAATCCACTTACCTTGGGTATTGAGACAGTGGGTGGAGTCATGA 1072410 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | || |||||| |||||| || ||||| || ||| | | ||||| || || Sbjct 1072409 CCAAACTTATCTCTAGAAACTCTGTCATTCCAACAAAGAAAGCCCAGGTATTCTCCACAG 1072350 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | | || || || | ||||||| ||||| | ||||| || |||||| | | || | Sbjct 1072349 CTGCTGACAACCAGAACACTGTTACCATTCAGGTATTTGAGGGGGAAAGACCAATGACCA 1072290 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 || | || ||| ||||| | ||| || | || || || |||||||| ||||| | Sbjct 1072289 AAAACAACCATCTTCTTGGCAAATTTGATCTCACTGGAATCCCACCTGCTCCACGTGGTG 1072230 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 | ||||||||||| || || || || || || | |||||| || || Sbjct 1072229 TGCCGCAAATTGAGGTCACCTTTGAAATTGACGTCAATGGTATCTT 1072184 Score = 96.9 bits (106), Expect = 3e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 ||||||| |||| || | ||||| || ||||| || || || | || ||||| || | Sbjct 1068124 AAGTTACCCATGCTGTTGTTACTGTGCCTGCATACTTCAACGATGCTCAGCGTCAGGCCA 1068065 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||| ||||| || |||||||| | | || |||||||| || || | Sbjct 1068064 CAAAAGATGCTGGAACCATTGCAGGTCTTAATGTGATGAGAATCATCAATGAGCCCACAG 1068005 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| |||| ||||| || || || Sbjct 1068004 CTGCTGCTATTGCTTATGGTCTGGACAA 1067977 Score = 96.9 bits (106), Expect = 3e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 ||||||| |||| || | ||||| || ||||| || || || | || ||||| || | Sbjct 1074265 AAGTTACCCATGCTGTTGTTACTGTGCCTGCATACTTCAACGATGCTCAGCGTCAGGCCA 1074206 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||| ||||| || |||||||| | | || |||||||| || || | Sbjct 1074205 CAAAAGATGCTGGAACCATTGCAGGTCTTAATGTGATGAGAATCATCAATGAGCCCACAG 1074146 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| |||| ||||| || || || Sbjct 1074145 CTGCTGCTATTGCTTATGGTCTGGACAA 1074118 >seq754 Length=972672 Score = 98.7 bits (108), Expect = 8e-15 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || ||||| ||||| || ||||| ||| || |||||| ||||| | | Sbjct 126759 CGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCA 126818 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 |||||||||||||| || || ||||| || | || ||||| || || || |||||||| Sbjct 126819 TCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTG 126878 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAA 563437 |||||||| || || || ||| || | || | || || || ||| ||||| | Sbjct 126879 TCTTGAATCTTCGTCTTCACATTCTCGATACTGTC-GCTTG-GTTCAACTTCAAGAGTGA 126936 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||||| || ||||| || ||||| || ||||| Sbjct 126937 TAGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029193774242170