Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq552 210 3e-49 seq502 91.5 2e-13 >seq552 Length=297145 Score = 210 bits (232), Expect = 3e-49 Identities = 370/536 (69%), Gaps = 11/536 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 |||||||||||||| || | ||||| || || ||||| ||||||||||| || | Sbjct 246393 CATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGA 246334 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||||| |||||||| || |||||||| |||| |||||| | ||||| ||||| Sbjct 246333 CCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAAT 246274 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA------GTTGAACTATAA 37349 || || || || || ||||| || |||| | | ||| ||| || ||||| | | Sbjct 246273 ATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTA 246214 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 || |||||||| || ||| | ||||||| ||||||||| | |||||||| Sbjct 246213 TC---CATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATA 246157 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || || | | || ||| | || | || ||||| ||||||| | || Sbjct 246156 GCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGACAG 246097 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 |||||||| |||||||| ||||| || || || ||||| || || ||||| || || || Sbjct 246096 TACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCG 246037 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | | ||| | || | | ||||| | | ||||| || |||||| |||||||| Sbjct 246036 GGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTG 245977 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649 ||||| ||||| || ||||||| | || || ||| |||| | | | ||||| | Sbjct 245976 GCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTTCC 245917 Query 37650 CAATC-ATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCA 37704 ||||| | ||| || ||| | || ||||| || || |||||||| ||||| Sbjct 245916 CAATCGACTAA-GTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCA 245862 >seq502 Length=1712060 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 37491 TCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAA 37550 ||||| ||||| || || ||||| ||||| || || || | | || || || | Sbjct 404521 TCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCTG 404462 Query 37551 AACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACA 37610 || | || | | ||||||||||| || || ||||| ||||| || ||||||||||||||| Sbjct 404461 AAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACA 404402 Query 37611 TATTTTATAAAATGTCTTTCATCAT 37635 | || || |||| |||||||||| Sbjct 404401 TGCTTGATGAAATACCTTTCATCAT 404377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 37491 TCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAA 37550 ||||| ||||| || || ||||| ||||| || || || | | || || || | Sbjct 408772 TCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCTG 408713 Query 37551 AACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACA 37610 || | || | | ||||||||||| || || ||||| ||||| || ||||||||||||||| Sbjct 408712 AAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACA 408653 Query 37611 TATTTTATAAAATGTCTTTCATCAT 37635 | || || |||| |||||||||| Sbjct 408652 TGCTTGATGAAATACCTTTCATCAT 408628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592302488145320