Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq754 116 3e-21 >seq754 Length=972672 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || ||||| |||| ||| || || ||| || ||||||||||| || Sbjct 126063 CCGCCACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126122 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || ||||||||||| ||||| || ||||| | |||||| || | |||| Sbjct 126123 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 126182 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||||||| || ||| | | || || || ||| || Sbjct 126183 ATGCCTTCTTTGTCTTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACT 126242 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || ||||| |||| ||| || || ||||||||||| Sbjct 126243 TCGAGCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 126289 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||||||||| ||| || || ||| || ||||||||||| || Sbjct 126519 CCGCCACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126578 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || ||||| ||||| || || || ||||||| |||||| || | || Sbjct 126579 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGG 126638 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| || ||| | | || || || ||| || Sbjct 126639 ATGCCTTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACT 126698 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || ||||| |||||||| || || ||||||||||| Sbjct 126699 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCAT 126745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928625705359