Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1148 167 2e-35 seq754 134 9e-26 seq1911 120 2e-21 seq1888 102 5e-16 >seq1148 Length=1039997 Score = 167 bits (184), Expect = 2e-35 Identities = 374/554 (68%), Gaps = 12/554 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || || || ||| | ||||| ||||| ||||| | || | ||| |||||||| Sbjct 352275 GCGATCGGAATCGATCTTGGAACGACTTATTCCTGTGTTGGAGTCTTTCAACATGGTAAA 352334 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| || ||||| || |||||||| |||||||| || |||||| ||||| | Sbjct 352335 GTTGAAATTATCGCCAACGATCAAGGTAACAGAACAACTCCCAGCTATGTTGCTTTTTCG 352394 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 ||||| |||| | | || || || || || || | ||||| ||| || || || Sbjct 352395 GAAACGGAACGTATGATCGGCGACGCAGCCAAGAACCAAGCAACATTGAACCCAAGCAAC 352454 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | |||||||| || ||| | || || | || ||||| || | ||| ||| | Sbjct 352455 ACTGTCTTTGATGCCAAGAGACTAATCGGCAGGAAGTTTGACGACCCTGATGTTCAAGCG 352514 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCA 474628 || | || |||||||||| | || || || | | || ||||| | || || | Sbjct 352515 GACAGAAGTAATTGGCCTTTCCAAGTCATCAACGAGGCCGGGAAACCTAAAATCCGAGTA 352574 Query 474629 -ATAC--ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | || ||| ||| | ||| ||| | || ||| |||| || |||||| | Sbjct 352575 GAGACCAACG-AGGGGTGG--AAAAGTTTTACTCCAGAAGAAATCAGCTCCATGGTTCTG 352631 Query 474686 GCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTA 474742 | ||||||||| | | || |||| | ||||| | ||| ||| || || ||||| Sbjct 352632 ACGAAAATGAAAGAGATAGCTGAAGCTTA---CTTGGGCGAGACAGTGACGGACGCAGTC 352688 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || ||||||||||| || ||||| || || || || |||||||| || ||| | Sbjct 352689 ATCACAGTGCCAGCATATTTCAACGATTCACAGCGACAGGCCACTAAAGACGCTGGACTA 352748 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || || || ||||| | || || |||||||| || || ||||| | || || Sbjct 352749 ATAGCGGGGCTGAATGTCAAGAGAATCATCAATGAACCCACGGCTGCCGCTGTCGCGTAC 352808 Query 474863 GGTCTTGATAAGAA 474876 || | || ||||| Sbjct 352809 GGATTGGAAAAGAA 352822 Score = 143 bits (158), Expect = 2e-28 Identities = 531/813 (65%), Gaps = 33/813 (4%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 ||||| || | ||||||| ||||| |||||||| || ||| | |||| |||| Sbjct 352926 ACAGCCGGCAACACACATCTCGGTGGAGAAGATTTCGACAATCGCGTTGTGGATCACTTC 352985 Query 475425 GTGTTGAAGATTTCAAGAGGAAA---AATAAAGTTGATCTTTCAA---CATCTGCTAAAG 475478 ||| ||||| |||||| | || || |||| |||| ||| || | | | || Sbjct 352986 GTG--GAAGAATTCAAGCGCAAGTTCAAGAAAG---ATCT--CAAGGACAACC-CAAGAG 353037 Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC 475538 | ||| | || || | ||| ||||||||||| || ||| || | || || || ||||| Sbjct 353038 CCTTACGCCGCCTGAAAACCGCTTGTGAACGAGCCAAGAGAACCCTGTCGTCCAGTACTC 353097 Query 475539 AAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTT--ATTAC 475596 | | | | | || | || || || | || || ||||||| ||||| ||||| Sbjct 353098 AGGCCAATATCGAGATCGACTCACTGTCCGATGGTATTGATTTC--TACTCCAGGATTAC 353155 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 | || |||||||| || | ||| |||||||| | | | ||||| || | Sbjct 353156 CCGCGCGAAATTTGAGGAACTCTGTCTGGATCTCTTCCGTTCATGTCTGGAACCAGTGAA 353215 Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAG 475715 ||| | |||| ||||| | ||||||||||| |||| |||| || | ||||| || | Sbjct 353216 ACAGGCACTCACTGATTCACAGCTTGACAAATC-CAAGATCCACGAGGTGGTTCTGGTTG 353274 Query 475716 GAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAA 475775 ||||||| |||||||| ||||| || || | ||| || || || | || ||| Sbjct 353275 GAGGTTCTACAAGAATCCCAAAGGTACAGCAACTCCTTGCAGAATTCTTCAGTGACAAAC 353334 Query 475776 AGTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 |||| | | |||| | || || || || || || |||||||| || || |||| || Sbjct 353335 AGTTGA--GCAAGTCGATCAACCCAGACGAGGCGGTGGCATATGGTGCCGCAATCCAGGC 353392 Query 475834 AGCTATTTTATCAGGTCAATCAGA--CGAGAAACTAAATA-ATATTGTACTTGTTGACGT 475890 || |||||||| ||| | |||| ||||| || | | |||| | | || || Sbjct 353393 CGCAATTTTATCCGGT-GACCAGAGTTCAGAAATCAAGGACGTCTTGT--TGCTCGATGT 353449 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 | || || | || ||||||| | ||| || | ||||| || || ||||| | Sbjct 353450 TGCACCGCTAAGTCTCGGAATTGAAACCGCTGGTGGAGTGATGACCAACCTAATTGAACG 353509 Query 475951 AAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAAC 476010 ||| | | || ||| ||| ||||||| || || || || || ||||| ||||| Sbjct 353510 CAATGCCCGAATTCCAACCAACGTTTCAAAAGAGTTCTCAACCTACTCAGATAACCAAAC 353569 Query 476011 AACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACT 476070 | | || |||| || | |||||||| || || || || ||| | || || | || Sbjct 353570 AGCCGTCTCCATTCAGGTGTTTGAAGGAGAGCGAGTTTTGACCAAATACAACAATCAGCT 353629 Query 476071 TGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 ||| ||| |||| || || || ||||| || | || || || | || ||||| Sbjct 353630 GGGACGATTTGATCTGTCGGGAATCCCCCCTGCACCGCGCGGCGTGCCGAAGATCGAAGT 353689 Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAA 476163 |||| ||| | || | || || | |||||| Sbjct 353690 CTCTTTCGATGTCGACACCAACGGGA-TCTTAA 353721 >seq754 Length=972672 Score = 134 bits (148), Expect = 9e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || || ||||| ||||| || ||||| || ||||||||| ||||| | | | Sbjct 126759 CGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCA 126818 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||||||||| || ||||| ||||| ||||| |||||||| || || || ||||| ||| Sbjct 126819 TCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTG 126878 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| || ||| || ||| | || | || | |||||| || ||| Sbjct 126879 TCTTGAATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCAACTTCAAGAGTGATA 126938 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| |||||||| ||||| || || Sbjct 126939 GTTTTACCGGTCAGAGTCTTCACGAAGATCTG 126970 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTA-GAG 480609 ||| ||||| | || |||||||| || || || || ||| || || |||| ||| Sbjct 126524 ACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTC-GCTAAGAG 126582 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| | |||||| ||||| || || || | ||||| || ||||| || | Sbjct 126583 TGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGC 126642 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||| |||||||| |||||| || ||| ||||| | || | | | ||||| Sbjct 126643 CTTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAA 126702 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| | ||||||||||||||| || Sbjct 126703 GCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTG 126742 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTA-GAG 480609 ||| ||||| | || |||||||| || || || || ||| || || |||| ||| Sbjct 126068 ACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTC-GCTAAGAG 126126 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| | |||||||| || || || || | ||||| || || ||||| | Sbjct 126127 TGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGC 126186 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||| ||||||||||||||| || ||| |||||| | || | | ||| | Sbjct 126187 CTTCTTTGTCTTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGA 126246 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| |||||||| |||||||| || Sbjct 126247 GCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTG 126286 >seq1911 Length=3784159 Score = 120 bits (132), Expect = 2e-21 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785 |||| || |||| || ||||||| || ||||| || || ||| |||| ||||| || | Sbjct 1068124 AAGTTACCCATGCTGTTGTTACTGTGCCTGCATACTTCAACGATGCTCAGCGTCAGGCCA 1068065 Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845 | |||||||| |||| ||||||||||||||||| | | || || ||||| || |||| Sbjct 1068064 CAAAAGATGCTGGAACCATTGCAGGTCTTAATGTGATGAGAATCATCAATGAGCCCACAG 1068005 Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||||||||||| || ||||| Sbjct 1068004 CTGCTGCTATTGCTTATGGTCTGGACAAGAA 1067974 Score = 120 bits (132), Expect = 2e-21 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785 |||| || |||| || ||||||| || ||||| || || ||| |||| ||||| || | Sbjct 1074265 AAGTTACCCATGCTGTTGTTACTGTGCCTGCATACTTCAACGATGCTCAGCGTCAGGCCA 1074206 Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845 | |||||||| |||| ||||||||||||||||| | | || || ||||| || |||| Sbjct 1074205 CAAAAGATGCTGGAACCATTGCAGGTCTTAATGTGATGAGAATCATCAATGAGCCCACAG 1074146 Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||||||||||| || ||||| Sbjct 1074145 CTGCTGCTATTGCTTATGGTCTGGACAAGAA 1074115 >seq1888 Length=1284944 Score = 102 bits (112), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 474664 ACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGA 474721 ||| || |||||||||||| | | |||||||| |||| ||| |||| |||||||| Sbjct 555080 ACAGATATCTTCAATGGTTCTGACTAAAATGAAGGAAACTGCGGAAGCT--TATCTTGGC 555023 Query 474722 CAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAA 474781 | |||| ||||| ||||| | ||||||||||||||||| |||||||| || | || Sbjct 555022 GAGAAAGTGACTGACGCAGTTGTCACTGTTCCAGCATATTTCAATGATTCACAGAGGCAG 554963 Query 474782 GCAACTAAAGATGCGGG 474798 || || |||||||| || Sbjct 554962 GCCACCAAAGATGCCGG 554946 Score = 98.7 bits (108), Expect = 6e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || || ||| | || ||||| || ||||| | ||||| ||| | |||||||||||| Sbjct 555861 GGAATCGATCTCGGGACTACGTATTCCTGTGTTGGTGTTTTCCAACACGGTAAAGTAGAA 555802 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 ||||| || || || ||||||||| ||||||| || |||||| | || || ||||| Sbjct 555801 ATAATCGCTAACGATCAAGGTAATCGAACAACTCCGAGTTATGTTGCCTTCACGGAAACC 555742 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 ||| || || || || ||||| || |||||| || ||||||| ||||| || Sbjct 555741 GAAAGACTCATCGGGGACGCTGCCAAGAATCAAGTCGCCCTCAATCCTGCAAATACAGTT 555682 Query 474515 TT 474516 || Sbjct 555681 TT 555680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268096284251084