Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1707 96.9 2e-15 >seq1707 Length=334361 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25962 AAAATAAATCTCTCGCTCT--CATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGA 26018 |||||| |||||| || | | |||||||||||| ||| ||||| ||| || |||| Sbjct 223603 AAAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTG-TTCTTCCTTAAGTCCAAGA 223661 Query 26019 AATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTC 26078 ||||||| ||||| |||||| ||||| || || |||||||| ||| ||| || Sbjct 223662 AATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGT 223721 Query 26079 CTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATC 26138 || ||||| || || || |||||||| ||||| |||| |||||| || || | | Sbjct 223722 TGCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGAC 223781 Query 26139 CAGTTGAAAATCCGTTTGT 26157 | |||| | ||| || || Sbjct 223782 CGTTTGAGACTCCATTGGT 223800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034038772975