Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq552 154 3e-32 >seq552 Length=297145 Score = 154 bits (170), Expect = 3e-32 Identities = 372/564 (66%), Gaps = 9/564 (2%) Strand=Plus/Minus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 |||||||||||| || | || |||||||| || || || |||||| ||| || | Sbjct 246393 CATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGA 246334 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||||| ||||| || || | |||||| ||||||||||| || ||| |||||| Sbjct 246333 CCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAAT 246274 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 || ||||||||| |||||| || | | |||| | ||||| | || | | || | Sbjct 246273 ATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAA-AGTAGCTGTAGAACTTTT 246215 Query 50004 ATCCA---ATTTATA-GCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 ||||| ||||| | ||||| | ||| |||||||| | | | || | | |||| ||||| Sbjct 246214 ATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGC 246155 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 || || | | | || || ||||| | | | || Sbjct 246154 ATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGACAGTA 246095 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 |||||| || || | |||||| || ||||||||| || || |||||| || | Sbjct 246094 CATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCGGG 246035 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 | || | || | |||| | ||| || || ||||| || || |||||| || Sbjct 246034 AACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTGGC 245975 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 ||||||||| || | ||| | | ||| || |||||||| | | || | |||||||| Sbjct 245974 TGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTTCCCA 245915 Query 50300 A--GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 | || | ||| || ||| | || |||||||| | |||||||| ||||| || ||| Sbjct 245914 ATCGACT-AAG-TCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCACAGAT 245857 Query 50358 TTTTTATACATTTGATATATATCA 50381 || || || | || |||| ||| Sbjct 245856 TTCTTGTAGAATTTCCATATGTCA 245833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984455617814550