Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq754 127 2e-24 seq506 102 6e-17 >seq754 Length=972672 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| |||||||| || || || | ||||| ||||| ||||| |||||||||||||| Sbjct 126746 TCCACCCCTCAAGCGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACT 126805 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || |||||||||||||| | || | | || ||||| || || Sbjct 126806 CAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGG 126865 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||||||||| ||| || || || ||| | || | | |||| |||| | Sbjct 126866 GATGCCTTCTTTGTCTTG-AATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCAA 126924 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| |||||||| || || | || || || || |||||||| Sbjct 126925 CTTCAAGAGTGATAGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||||| ||||| |||||||||||||| || || Sbjct 126290 TCCACCTCTCAGACGAAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCT 126349 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || | || || || || | ||||| || ||||| || || || Sbjct 126350 GAGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 126409 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||| |||||||| || || || || || ||| |||| | | ||| | || | Sbjct 126410 GATACCTTCTTTGTCCTG-GATCTTCGTCTTCACATTTTCAATGGAGTCGCTTGGCTCGA 126468 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || || |||||||| || | |||||| || || |||||||| Sbjct 126469 CTTCAAGCGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 126517 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| |||||| || || || || ||||| || || || || |||||| Sbjct 126530 ACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACC 126589 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| |||||||| | |||| ||| || || || || || || || ||||| Sbjct 126590 ATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTCTTT 126649 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| || ||||| || ||| | || | | ||| | || |||||||| || | Sbjct 126650 GTCTTG-GATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAGCGTGA 126708 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || ||||| || ||||||||| Sbjct 126709 TGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||| |||||| || || || || ||||| || || || || |||||| Sbjct 126074 ACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACC 126133 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || || | |||| || || || || || ||||| || ||||| Sbjct 126134 ATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTCTTT 126193 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| ||||| || ||| |||| | | ||| | || ||||| || || | Sbjct 126194 GTCTTG-AATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGAGCGTGA 126252 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || | || || || || ||||||||| Sbjct 126253 TGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 126290 >seq506 Length=2789561 Score = 102 bits (112), Expect = 6e-17 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 29550 TTATCGTTG-TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGT 29608 || || ||| |||||| |||| || ||||| | |||||| ||||| || || || |||| Sbjct 445611 TTTTCTTTGCTCCTCCTCTCAGTCGAAGCACAAGATGAAGAGTGGACTCCTTCTGGATGT 445552 Query 29609 TATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCT 29668 ||||||| || ||||| ||| ||||| ||||| |||||| | ||||||||||||| Sbjct 445551 TATAATCACTAAGAGTGCGTCCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTTTGCT 445492 Query 29669 GATCCGGCGGAATACC 29684 | || || ||||| || Sbjct 445491 GGTCAGGTGGAATTCC 445476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210124837553