Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq754 150 1e-31 >seq754 Length=972672 Score = 150 bits (166), Expect = 1e-31 Identities = 180/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||||| ||| | || | || |||||| ||||||||| ||| Sbjct 126279 AAAATCTGCATTCCACCTCTCAGACGAAGAACAAGGTGAAGAGTGGACTCTTTTTGAATG 126338 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| ||| ||| ||||| | || ||||| || |||||||| || ||||| | |||| Sbjct 126339 TTGTAGTCGCTGAGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAACCTCTGC 126398 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | |||||||||||| || ||| || | |||| || | || ||| Sbjct 126399 TGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTC-GTCTTCACATTTTCAATGGAGTC 126457 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || |||| |||||| ||||| || || | ||||| || ||||||||||| Sbjct 126458 GCTTGGCTCGACTTCAAGCGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 126517 Query 33750 A 33750 | Sbjct 126518 A 126518 Score = 113 bits (124), Expect = 3e-20 Identities = 171/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| ||||| || | || | || |||||| |||||| || ||| Sbjct 126735 AAAATCTGCATTCCACCCCTCAAGCGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATG 126794 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || ||||| || || || | || || | |||||| || || ||||| | |||||| Sbjct 126795 TTATAATCACTCAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGT 126854 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||||||||||| ||| ||| || | |||| || | |||| Sbjct 126855 TGATCGGGTGGGATGCCTTCTTTGTCTTGAATCTTC-GTCTTCACATTCTCGATACTGTC 126913 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||| || |||| ||||| |||||||| || | || || || ||||||||||| Sbjct 126914 GCTTGGTTCAACTTCAAGAGTGATAGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||| ||| || || ||| || || || ||||| ||| || ||||| | Sbjct 126074 ACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACC 126133 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || |||||||| || |||| | ||| || ||| | || | |||||||| Sbjct 126134 ATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATGCCTTCTTT 126193 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || ||| | |||| || | || |||||| | || || || | ||||| Sbjct 126194 GTCTTGAATCTT-TGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGACTTCGAGCGTGA 126252 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || || || |||||||| Sbjct 126253 TGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 126289 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||||| ||| || || ||| || || || ||||| ||| || ||||| | Sbjct 126530 ACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGTGCGACC 126589 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||||||| || || || || |||| | ||| || || | || | |||||||| Sbjct 126590 ATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCTTCTTT 126649 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || ||| | |||| || | || |||||| | || || |||| ||||| Sbjct 126650 GTCTTGGATCTT-TGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAGCGTGA 126708 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || || || || || |||||||| Sbjct 126709 TGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCAT 126745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696256247360