Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq754 111 4e-19 >seq754 Length=972672 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| |||||||| ||| || ||| || || || |||||| Sbjct 126214 GTGAAGACAAAGATTCAAGACAAAGAAGGCATTCCCCCAGACCAACAGAGGCTGATCTTC 126155 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||||||||| | ||| | ||| ||||| | ||||| ||||| Sbjct 126154 GCCGGAAAGCAGTTGGAAGATGGTCGCACTCTTAGCGACTACAATATTCAGAAGGAGTCG 126095 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || |||||| | || || Sbjct 126094 ACCCTTCATCTGGTTTTGCGTCTCCG 126069 Score = 105 bits (116), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 ||||| || || || ||||| ||||| | ||||| || ||| ||| | | ||| Sbjct 126502 AAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC---GACTCCATTGAA 126446 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| ||||| || || |||||||| || || ||| || || | ||| Sbjct 126445 AATGTGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAGCAGAGGTTGATC 126386 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||||||||||||||||||||| | ||| | ||| |||||| | || |||||| Sbjct 126385 TTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAACATTCAAAAAGAG 126326 Query 206362 TCTACTCTTCACCTTGTT 206379 || ||||||||||||||| Sbjct 126325 TCCACTCTTCACCTTGTT 126308 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAA-AGT 204810 || || | |||||| || ||||| || ||||| ||||| | ||| ||||| || || ||| Sbjct 126069 CGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTC-GCTAAGAGT 126127 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||| |||||||||||||||||| |||| ||||| Sbjct 126128 GCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTG 126172 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||| || || ||| || ||||| |||||| Sbjct 126670 GTGAAGACAAAGATCCAAGACAAAGAAGGCATCCCTCCCGACCAACAGAGACTGATCTTC 126611 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||| | ||| ||||| | ||||| ||||| Sbjct 126610 GCTGGCAAGCAATTGGAAGATGGTCGCACTCTTAGCGACTACAATATTCAGAAGGAGTCG 126551 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || ||| | || || Sbjct 126550 ACCCTTCATCTGGTGTTGCGTCTCCG 126525 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| |||||| | ||||| ||| |||| |||| Sbjct 126958 AAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCAAGCGACAGTATCGAGAAT 126899 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| || || || || | || || ||| Sbjct 126898 GTGAAGACGAAGATTCAAGACAAAGAAGGCATCCCACCCGATCAACAGCGTCTCATTTTC 126839 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | |||||||| | ||| || ||||| ||| | ||||||||||| Sbjct 126838 GCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTATAACATTCAGAAAGAGTCC 126779 Query 206365 ACTCTTCACCTTGTT 206379 ||||||||||||||| Sbjct 126778 ACTCTTCACCTTGTT 126764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181791530361293