Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq552 275 9e-69 seq1707 100 4e-16 >seq552 Length=297145 Score = 275 bits (304), Expect = 9e-69 Identities = 606/906 (67%), Gaps = 12/906 (1%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTC---TCGAAAAAATTAGTTTTGCC 39369 ||| ||||| ||||||| || || ||| |||| || ||||||||| |||||| Sbjct 246697 CATGACTCCACTTTTTTGATACTCTGAAAC---TTTCCGCTCATAAAAATTAGCTTTGCC 246641 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 |||||| || || |||||||| || || ||||| | | ||||| | |||| || Sbjct 246640 TTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAG 246581 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| ||| | | || || || |||||||| || ||||| | ||| | || Sbjct 246580 TCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGCA 246521 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 ||| || || | | | |||| ||| | | || ||||| || ||| | || Sbjct 246520 ATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAATTCTTTCTCTATGGCAAC 246461 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609 || || || ||| | || || | || || ||| |||||| ||| Sbjct 246460 CGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTCTGCCTTAAATGCGAAAA 246401 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 || | ||| || || ||||| || ||||| || || || ||| || || |||||||| Sbjct 246400 AATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAA 246341 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 ||| || ||||||||||| || | || |||| |||||| || | ||||| | ||||| Sbjct 246340 TGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGA 246281 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT---TGTATC 39786 ||||| || || || || || ||||| ||||||| ||| || || || | |||| Sbjct 246280 GAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGA 246221 Query 39787 A---TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | |||| ||||| || |||||| | || || || || ||||| || | ||||| Sbjct 246220 ACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTC 246161 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 |||||||| || | | | || || | || | | || || || |||||||| Sbjct 246160 AATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAG 246101 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || |||||||| || || |||||||| || || || ||||||||||| ||||||||||| Sbjct 246100 ACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGC 246041 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 || | || ||||| ||| | | || ||||| |||| || || ||||| ||||| Sbjct 246040 CTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATC 245981 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT 40083 ||| || || || || |||| |||||| ||| || | |||||| | | ||| ||| Sbjct 245980 ACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTT 245921 Query 40084 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTC 40143 | ||| || | || ||| | || |||||||| | |||||||| || ||| | Sbjct 245920 TTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCAC 245861 Query 40144 TGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATT 40203 | || ||||| | |||||||| ||| | | | || |||||| | |||||||| || Sbjct 245860 AGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAATCTGTT 245801 Query 40204 TGGATT 40209 ||||| Sbjct 245800 GGGATT 245795 >seq1707 Length=334361 Score = 100 bits (110), Expect = 4e-16 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| ||||| || || ||| |||||| ||||||| ||| || ||||| || || Sbjct 224293 ACCAATTCCACCAGCTGATTTTGAGATTCTAGCACAAGTCATCAGCGTTTCATAAATGCC 224352 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA-G 69991 || ||||| |||||| ||| | || | |||||||| |||| || || | || | | Sbjct 224353 ATCAATGCTGTCATCTGACATTGTCAGCAAGAAACAGCTTGACAGCTG-TGGTTTACAAG 224411 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT 70051 | || | ||| || | ||| || || || || |||||||| || ||||| | || ||| | Sbjct 224412 TGCCAGAATTGAAAAGTGTCGGTGAGGCATGTGTGAACCACTTCTCAGACATCAAATTAT 224471 Query 70052 ATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 | |||||||| || | || || || || || ||||| | | || |||||||||| Sbjct 224472 AAGTTTCAATGGCAGCATCAATGTCATCCTTGTGGATTCCAACTGAAACTCGCATCAACA 224531 Query 70112 TATG 70115 | || Sbjct 224532 TGTG 224535 Score = 96.9 bits (106), Expect = 5e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 ||||| || ||||||||||| || | || | | | |||||| || || || ||||| Sbjct 218292 ATTAA-TACCTGAAATTCCCCTGAAAGAACACGTCTTGAGTAAATGTTGCTTGTGTATGG 218350 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 || | |||||| ||||| || ||||| || ||||| || || |||||||| ||||||| Sbjct 218351 CTCAAAAGATTCGTTATTGCCAAGAATCTGTGCAGTGGAAGCTGTTGGCATTGGTGCCAA 218410 Query 68829 CAATAAACTATTTCTAAGACCAT 68851 ||||||||| || || | |||| Sbjct 218411 CAATAAACTGTTCCTCAATCCAT 218433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| ||||| || ||| ||| | || || || | | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||||||||| ||||| |||||||| || || ||||| | ||| | | || Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | ||||||||||| ||||| | | |||| | |||||| || Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGG 217496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892202566120