Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq552 246 2e-60 >seq552 Length=297145 Score = 246 bits (272), Expect = 2e-60 Identities = 428/618 (69%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 |||||| || ||||| || |||||| |||||||| | | | | |||||||||| Sbjct 245783 TTGCTTCAGGACAATCCCAACAGATTTGTCTTGTTTCCACTAAAGTTCCCTGACATATGG 245842 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || | ||||| ||| | ||| || |||||||| | |||||||| || || || Sbjct 245843 AAATTCTACAAGAAATCTGTGGCATCCTTTTGGACGGTCGAAGAAGTGGACCTGGGAAAT 245902 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 ||||||| ||||| | | || | ||||||||||| || || || ||| || Sbjct 245903 GACTTAGTCGATTGGGAAAAACTGAACTCTCAAGAAAAACAGTTCATTTCACATGTTCTG 245962 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 ||||| || || || || || || ||||| || || ||||| |||| | Sbjct 245963 GCGTTCTTCGCAGCCAGTGATGGCATAGTTGGAGAGAACTTGGTCGAAAGGTTCTATCGG 246022 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || | ||| | || || ||| ||||||| || || |||||||| ||||| ||||| ||| Sbjct 246023 GAGATACAAGTTCCCGAGGCAAGATGTTTCTACGGATTTCAAATCGCCATGGAAAACATT 246082 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || ||||||||| |||| | || || || ||||||| || |||||| | Sbjct 246083 CACTCCGAAATGTACTGTCTGTTAATTGACACTTACATCAGGGACCCAGGAGAGAAGGA- 246141 Query 44036 CGATTGTTT--AATGCGATAGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 || |||| ||||| || ||||| | |||| | ||||| | || ||| | ||||| Sbjct 246142 -GAAGGTTTTCAATGCTATTGAAACTTTCCCCTGTG-TTAAAAAAAAGGCACAGTGGGCA 246199 Query 44093 CTTAAATGGAT------AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 |||||||||| || ||| | | | ||||||| ||| || |||| |||||||| Sbjct 246200 TTTAAATGGATGGATAAAAGTTCTACAGCTACTTTTGGTGAAAGAGTTGTTGCGTTTGCG 246259 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | ||| || || || ||||| || || ||||||| | || |||||| | |||||| || Sbjct 246260 GCTGTCGAGGGGATATTCTTCTCTGGTGCGTTTGCATCAATTTTTTGGATCAAGAAAAGA 246319 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || | |||||||| |||| ||||| |||||||| || | || |||||| | || Sbjct 246320 GGCCTAATGCCTGGTCTGACATTTTCTAATGAGTTGATTTCCAGGGACGAAGGCCTTCAC 246379 Query 44267 TGCGATTTTGCTTGCTTG 44284 || |||||||| ||| || Sbjct 246380 TGTGATTTTGCATGCCTG 246397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446636557665