Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1707 91.5 2e-13 seq552 87.8 2e-12 >seq1707 Length=334361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| |||||||||| ||||| |||| ||||| || | || ||||| ||||| Sbjct 218330 GTAAATGTTGCTTGTGTATGGCTCAAAAGATTCGTTATTGCCAAGAATCTGTGCAGTGGA 218389 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||||||||||||||||||| ||| | |||||| Sbjct 218390 AGCTGTTGGCATTGGTGCCAACAATAAACTGTT 218422 >seq552 Length=297145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || || || || | |||||| | ||||| || || ||||| Sbjct 246390 GCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGACCA 246331 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || || | ||||| | |||| |||| | ||| || | || |||||||| || Sbjct 246330 GGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCA-AACGCACCAGAGAAGAATAT 246272 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGC-GAAGGAGC--GAGACTTTGCATC 122834 ||||| ||| ||||||||||| || | ||| | ||| ||| ||| || ||| Sbjct 246271 CCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTATC 246212 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 | |||||| | |||||| | ||||| || | || ||| || | ||||| || || | Sbjct 246211 CATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGCATT 246152 Query 122895 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 122942 || | || || ||| || | ||| | ||||| ||||||| || Sbjct 246151 GAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAA 246104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016825176800