Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq552 86.0 7e-12 >seq552 Length=297145 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/312 (66%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 || |||||||| | ||||| || | || || | | ||| ||| || | ||||||| Sbjct 246080 ATTCACTCCGAAATGTACTGTCTGTTAATTGACACTTACATCAGGGACCCAGGAGAGAAG 246139 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | | ||| ||| || || || | |||| |||||| |||| ||| | ||||| Sbjct 246140 GAGAAGGTTTTCAATGCTATTGAAACTTTCCCCTGTGTTAAAAAAAAGGCACAGTGGGCA 246199 Query 59946 ATGCAGTGGATG------AGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCA 59999 | | |||||| ||| || ||| | |||| || | | | || ||||| Sbjct 246200 TTTAAATGGATGGATAAAAGTTCTACAGCTACTTTTGGTGAAAGAGTTGTTGCGTTTGCG 246259 Query 60000 TGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGT 60059 || || || || ||||||||||| |||| | ||||| ||| |||| || | Sbjct 246260 GCTGTCGAGGGGATATTCTTCTCTGGTGCGTTTGCATCAATTTTTTGGATCAAGAAAAGA 246319 Query 60060 GGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||||| ||||| || |||| || || || ||| |||||||| ||||||| ||||| || Sbjct 246320 GGCCTAATGCCTGGTCTGACATTTTCTAATGAGTTGATTTCCAGGGACGAAGGCCTTCAC 246379 Query 60120 CAGGAGTTTGCA 60131 || |||||| Sbjct 246380 TGTGATTTTGCA 246391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511546269520