Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq754 140 4e-28 seq506 86.0 7e-12 seq116 84.2 2e-11 >seq754 Length=972672 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || ||||| || ||||| |||||||| ||||| || Sbjct 126976 ATCATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCA 126917 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || || || | ||| ||||| | || ||||| ||||| || || || || || || Sbjct 126916 AGCGACAGTATCGAGAATGTGAAGACGAAGATTCAAGACAAAGAAGGCATCCCACCCGAT 126857 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || |||||||| ||||| ||||| || ||||| || |||| ||||| || || ||| Sbjct 126856 CAACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTAT 126797 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || | || || || ||||||||||| || || Sbjct 126796 AACATTCAGAAAGAGTCCACTCTTCACCTTGT 126765 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || |||||||| || || || ||||| || ||| || | Sbjct 126517 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC 126458 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||| |||| ||||| | || || |||||||| || || || || ||||||||| Sbjct 126457 GACTCCATTGAAAATGTGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 126398 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||| | | || || || || ||||| | || |||| ||| || || ||| ||||| || Sbjct 126397 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGC-GACTACAA 126339 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || ||||||||||| || || | ||||| | |||||| Sbjct 126338 CATTCAAAAAGAGTCCACTCTTCACCTTGTTCTTCGTCTGAGAGGTGGA 126290 >seq506 Length=2789561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| || |||||||| | | |||||||||||||| || ||||| |||| || Sbjct 445476 GGAATTCCACCTGACCAGCAAAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGACGC 445535 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || || || ||||| |||| ||||| |||||||||||||| || Sbjct 445536 ACTCTTAGTGATTATAACATCCAGAAGGAGTCCACTCTTCATCTTGT 445582 >seq116 Length=298635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || |||||||| || |||||||| || || |||| || | | | || ||||| | | Sbjct 245387 ATACAAATCTTCGTTAAGACGCTGACTGGGAAGATCATCATTTTGGAAGTTGAACCGGCC 245328 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 | ||| | | | || | |||||||| |||||||| |||||||| || || || Sbjct 245327 ATTTTCATAGAGGAGGTAAAAGTCAAAATTCAAGACAAGGAAGGAATTCCACCTGAACAT 245268 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 |||| ||| || ||||||||||| |||| ||| ||| ||| || Sbjct 245267 CAGCATCTCATCGTTGCTGGTAAGGAACTTGAGAATGGTCGCAC 245224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296619874960