Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq754 93.3 3e-14 >seq754 Length=972672 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||||||| ||| || || |||||| ||||| || || || | Sbjct 126519 CCGCCACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126578 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| || || || || || | | ||||||||| || || Sbjct 126579 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGG 126638 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| |||| ||||| || || | ||| | ||| ||| ||| | Sbjct 126639 ATGCCTTCTTTGTCTTGGATC-TTTGTCTTCACATTCTCAATGGAGTCGCTCG-GCTCAA 126696 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || ||||| || || || || ||||||||||| Sbjct 126697 CTTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCAT 126745 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| ||| || |||||||||||||| || || || | |||||||||||| Sbjct 126771 TGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCAAGTTGT 126830 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||||||| || || || | || || |||||| ||| || Sbjct 126831 TTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTCT-TGAATCTT 126889 Query 34624 TGTTTTAACGAT---AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 || || || | | | ||| ||| | || ||||| | || || ||||||||| Sbjct 126890 CGTCTTCACATTCTCGATACTGTCGCTTGG--TTCAACTTCAAGAGTGATAGTTTTACCG 126947 Query 34681 GTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || | || ||||| || ||||||||| ||| Sbjct 126948 GTCAGAGTCTTCACGAAGATCTGCATGATGA 126978 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| |||| ||| || || |||||| ||||| || || || | Sbjct 126063 CCGCCACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTA 126122 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || ||||| || || | | ||||||||| || || Sbjct 126123 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 126182 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCA 34657 | || || |||||| |||||| || || || | ||| | ||| ||| ||| | Sbjct 126183 ATGCCTTCTTTGTCTTGAATCTTT-GTCTTCACATTTTCAATGGAGTCGCTCGG-CTCGA 126240 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || ||||| | || ||||| ||||||||||| Sbjct 126241 CTTCGAGCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 126289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722185462389