Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq754 145 2e-29 seq506 98.7 2e-15 >seq754 Length=972672 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||||||||||||||| || ||||||||||| || || | |||||| Sbjct 126762 AGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCT 126821 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| ||||| || || || ||||| || || || | ||||| ||||| Sbjct 126822 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTCT 126881 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| ||||| || ||||| |||| ||| |||||| || |||||||| Sbjct 126882 TGAATCTTCGTCTTCACATTCTCGATACTGTC---GCTTGGTTCAACTTCAAGAGTGATA 126938 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || || | |||||| Sbjct 126939 GTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 126973 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||||||||||||||| ||||| || || || || | |||||| Sbjct 126306 AGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTGAGAGTGCGACCATCT 126365 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | | || ||||| || || | ||||| |||||| Sbjct 126366 TCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCC 126425 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||||| ||||| |||| ||| |||| || || || || ||||| Sbjct 126426 TGGATCTTCGTCTTCACATTTTCAATGGAGTC---GCTTGGCTCGACTTCAAGCGTGATG 126482 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || | |||||| Sbjct 126483 GTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 126517 >seq506 Length=2789561 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| || ||||| |||||||||||||| || |||||||||||||| ||| || | | Sbjct 445591 AGTCGAAGCACAAGATGAAGAGTGGACTCCTTCTGGATGTTATAATCACTAAGAGTGCGT 445532 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||| ||||| || || || || || | | ||| |||||||| |||| |||| Sbjct 445531 CCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTTTGCTGGTCAGGTGGAATTCCT 445475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159123291789545