Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq754 129 4e-25 >seq754 Length=972672 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || ||||| |||||||| |||||||| | | Sbjct 126973 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCAAGC 126914 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | | || ||| | || || || | || ||||||||||| | || || ||||| Sbjct 126913 GACAGTATCGAGAATGTGAAGACGAAGA-TTCAAGACAAAGAAGGCATCCCACCCGATCA 126855 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||||||||| ||||| | || ||| | | ||||| || Sbjct 126854 ACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTATAA 126795 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 126794 CATTCAGAAAGAGTCCAC 126777 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || ||||| ||||| || ||||| || | | Sbjct 126517 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC 126458 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||||| | | || || || | | |||||||||||| | || ||||| || Sbjct 126457 GACTCCATTGAAAATGTGAAGACGAAGA-TCCAGGACAAAGAAGGTATCCCCCCAGACCA 126399 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || || ||||||| | |||||| | |||| ||||| Sbjct 126398 GCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAA 126339 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 126338 CATTCAAAAAGAGTCCAC 126321 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || ||||| || ||||| |||||||| || | | Sbjct 126290 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACCATCACGCTCGAAGTCGAGCCGAG 126231 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| | |||||| | | || ||||| | || ||||||||||| | || ||||| | Sbjct 126230 CGACTCCATTGAAAATGTGAAGACAAAGA-TTCAAGACAAAGAAGGCATTCCCCCAGACC 126172 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || ||||| || || ||||||| | |||||| | |||| |||| Sbjct 126171 AACAGAGGCTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTTAGCGACTACA 126112 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | || || || ||||| || | ||| | ||||| Sbjct 126111 ATATTCAGAAGGAGTCGACCCTTCATCTGGTTTT 126078 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| || | || ||||| || ||||| || |||||||| | | Sbjct 126746 AATGCAGATTTTCGTTAAGACTTTGACCGGAAAGACCATCACGCTTGAAGTTGAGCCGAG 126687 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| | |||| ||| | || ||||| | | ||||||||||| | || || || | Sbjct 126686 CGACTCCATTGAGAATGTGAAGACAAAGA-TCCAAGACAAAGAAGGCATCCCTCCCGACC 126628 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || || ||||| ||| ||||||| | |||||| | |||| |||| Sbjct 126627 AACAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTAGCGACTACA 126568 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || ||||| || Sbjct 126567 ATATTCAGAAGGAGTCGAC 126549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001637021964