Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq754 132 1e-25 seq1933 118 3e-21 >seq754 Length=972672 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || || || || || || || || || | |||||| ||| | ||| Sbjct 126524 ACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGCTAAGAGT 126583 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||||||||| |||| ||||||||||| || || || Sbjct 126584 GCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAGGGATGCC 126643 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||||||| ||||||| || |||| ||| | || || || | Sbjct 126644 TTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAACTTCAAG 126703 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||| || |||||||| || | ||| | |||||| Sbjct 126704 CGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCATT 126746 >seq1933 Length=16138 Score = 118 bits (130), Expect = 3e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || ||||| || || ||| | || || ||||| || |||||||||| ||||| || ||| Sbjct 13832 CATCTTTATAATGTAATTGTAACAGCACATGCTTTGATTATGATTTTTTTTTTAGTAATG 13891 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 ||||||||||| || || || ||||| || | || || ||| ||||| || || ||| Sbjct 13892 CCGGTTATGATTGGGGGGTTTGGAAACTGGCTAGTGCCATTATATATTGGGGCACCGGAT 13951 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 ||||| || || | | || ||||| |||||||| ||| |||| ||| | || ||| || Sbjct 13952 ATGGCGTTCCCCCGATTAAATAATATTAGTTTTTGGTTATTACCACCTGCTTTGTTTTTA 14011 Score = 89.7 bits (98), Expect = 1e-12 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || |||||||| || ||||||||||| | | |||||||| || || || || Sbjct 14404 TTCGGGGTGCCCAAAAAACCAAAATAAATGTTGGAACAAAATAGGATCCCCACCTCCAGA 14345 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||||| | ||||||||||||| ||| ||||| |||| Sbjct 14344 AGGATCAAAAAAAGTTGTATTAAAATTTCGATCTGTTAATAACA 14301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501665101502