Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq552 244 9e-60 >seq552 Length=297145 Score = 244 bits (270), Expect = 9e-60 Identities = 412/594 (69%), Gaps = 3/594 (1%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| || | |||||||| ||| ||||| || |||||||| || | Sbjct 246393 CATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGA 246334 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||||| ||||| || || | |||||| || | ||||| | ||||| |||||| Sbjct 246333 CCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAAT 246274 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTG--GCTTTGTCT 4724 || || || || || |||||||| || | || || || | ||||| | | | Sbjct 246273 ATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTA 246214 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||||| |||||||| | || ||||| ||||| || || | || | ||||| Sbjct 246213 TCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGCA 246154 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || || | || || || |||||| || |||||||| |||| || | ||| Sbjct 246153 TTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGACAGTAC 246094 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||| || || || ||||| || || || ||||||||||| || ||||| || || | Sbjct 246093 ATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCTCGGGA 246034 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 ||||| | || | | || ||||| || ||||| || ||||| || ||||||||| Sbjct 246033 ACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCACTGGCT 245974 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 || || ||||||| |||||| || || || | | ||| | || || ||||||| ||| Sbjct 245973 GCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTTCCCAA 245914 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | | || || || | || |||||||| || |||||||| || || | | ||| Sbjct 245913 TCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCACAGATTTC 245854 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138 ||||| | ||| || ||||| ||| | |||| | ||||||||||||| Sbjct 245853 TTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAATCTGTTG 245800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039539378689