Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq552 284 2e-71 seq1707 111 2e-19 seq502 109 8e-19 >seq552 Length=297145 Score = 284 bits (314), Expect = 2e-71 Identities = 614/910 (67%), Gaps = 20/910 (2%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTC--TCGAAAAAATTAGTTTTGCCT 47894 ||| ||||| |||||||||| || | || || | || ||||||||| ||||||| Sbjct 246697 CATGACTCCACTTTTTTGATACTCTG--AAACTTTCCGCTCATAAAAATTAGCTTTGCCT 246640 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 ||||| || || ||||||||||| || ||||| | |||||| |||| || | Sbjct 246639 TCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTTTATAATACTTTTCAAGT 246580 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || ||| | | ||| || || ||||| || || || || | ||| | ||| Sbjct 246579 CCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACTCTGCCATGGAGTGGCAA 246520 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 || || || | | | |||| ||| | | || |||| || || | || Sbjct 246519 TTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAATTCTTTCTCTATGGCAACC 246460 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAAC 48134 ||||| || ||| | ||| ||| | ||||| | | ||||| ||| Sbjct 246459 GCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTCTGCCTTAAATGCGAAAAA 246400 Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || | |||||||||||||| ||||| ||||| || || ||| || || ||||||||| Sbjct 246399 ATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAAT 246340 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || ||||| |||||||| || | ||| |||| |||||| |||| || || | ||||| Sbjct 246339 GTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAG 246280 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 |||||||| || || || |||||||| || || ||| || || || | ||| || | Sbjct 246279 AAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCT--GTAG 246222 Query 48315 ----TGTATCCA-CCGTTG---TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | |||||| || || |||||| | ||||| || || ||||| || | |||| Sbjct 246221 AACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTT 246162 Query 48367 CTATAGCATTAAAGAGAAAGttttt-ttCATTGCTA--TCTTTAACGTAAGTATCTATTA 48423 | |||||||| || || || | ||| | || || | | |||||| || |||| Sbjct 246161 CAATAGCATTGAA---AACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTA 246105 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 | |||| ||||||||||||||||| ||||| || || || ||||||||||| ||||||| Sbjct 246104 ACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATC 246045 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 | || || | | |||| |||| | | || | ||| |||| ||||| ||||| | Sbjct 246044 TTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGC 245985 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 ||||||| || || || || || | |||||| ||| || | |||||| | || ||| Sbjct 245984 CATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCA 245925 Query 48604 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 |||| | ||| || | || ||| | || |||||||| | |||||||| |||| Sbjct 245924 GTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATG 245865 Query 48664 CCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATC 48723 || | | ||| || || | |||||||| ||| | | | | ||| || | ||||||| Sbjct 245864 CCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGACAAATC 245805 Query 48724 TATTTGGATT 48733 | || ||||| Sbjct 245804 TGTTGGGATT 245795 >seq1707 Length=334361 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||||||||| ||| ||| |||| || || | | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||||||||||| ||||| |||||||| ||||| ||||| | ||| | ||| Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 | || | ||||||||||| || ||| | | | |||| | |||||| || Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGG 217496 Score = 86.0 bits (94), Expect = 9e-12 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 || || ||||| || || || || ||| ||| ||| ||| || || || || Sbjct 224291 ATACCAATTCCACCAGCTGATTTTGAGATTCTAGCACAAGTCATCAGCGTTTCATAAATG 224350 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 || || || |||||||| ||| | || | |||||||| |||| || | | | | Sbjct 224351 CCATCAATGCTGTCATCTGACATTGTCAGCAAGAAACAGCTTGACAGCTGTGGTTTACAA 224410 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || | ||| || | |||||| || ||||| || ||||| || ||||| | | ||| Sbjct 224411 GTGCCAGAATTGAAAAGTGTCGGTGAGGCATGTGTGAACCACTTCTCAGACATCAAATTA 224470 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||||||| || | || ||||| | ||| || ||||| || | || |||||||| Sbjct 224471 TAAGTTTCAATGGCAGCATCAATGTCATCCTTG-TGGATTCCAACTGAAACTCGCATCAA 224529 Query 78518 CATATG 78523 ||| || Sbjct 224530 CATGTG 224535 >seq502 Length=1712060 Score = 109 bits (120), Expect = 8e-19 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 ||||| || ||||| ||||| || || |||||||| | ||||| || || ||| Sbjct 405986 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAGGTATGGTTCATGCCAATGAGT 405927 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 |||||||| || || || ||||| || |||||||| ||| |||||||||||| ||||| Sbjct 405926 TTAACTGGGAGGGCTTCTGTAAGGAATTCTTGTTCAATAATGACAGCATCCATGATTATT 405867 Query 48090 GA--TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 || || || | ||| || | |||| | | ||| | ||||| ||||| |||| Sbjct 405866 GATTTGATAACTTTTTCTGA--TGGTTTGTTGACCAAGTAGGAGAACATCAAACAGGCAA 405809 Query 48148 AATCACAATGAAGACC 48163 | |||||||||||||| Sbjct 405808 AGTCACAATGAAGACC 405793 Score = 109 bits (120), Expect = 8e-19 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 ||||| || ||||| ||||| || || |||||||| | ||||| || || ||| Sbjct 410238 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAGGTATGGTTCATGCCAATGAGT 410179 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 |||||||| || || || ||||| || |||||||| ||| |||||||||||| ||||| Sbjct 410178 TTAACTGGGAGGGCTTCTGTAAGGAATTCTTGTTCAATAATGACAGCATCCATGATTATT 410119 Query 48090 GA--TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 || || || | ||| || | |||| | | ||| | ||||| ||||| |||| Sbjct 410118 GATTTGATAACTTTTTCTGA--TGGTTTGTTGACCAAGTAGGAGAACATCAAACAGGCAA 410061 Query 48148 AATCACAATGAAGACC 48163 | |||||||||||||| Sbjct 410060 AGTCACAATGAAGACC 410045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694652015065120